RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 GH2P01242 217 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 KRT5P13647 590 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 ZNF26P17031 533 aaPredicted RBP3.05□□□□□ -1.92
CLK1-204ENST00000432425 CBLP22681 906 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 THOP1P52888 689 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 IRX1P78414 480 aaPredicted RBP3.05□□□□□ -1.92
CLK1-204ENST00000432425 MAMLD1Q13495 774 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 GTDC1Q4AE62 458 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 ARHGEF16Q5VV41 709 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 HAUS3Q68CZ6 603 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 ADALQ6DHV7 355 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 L3MBTL4Q8NA19 623 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 SLC47A1Q96FL8 570 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 PGAM5Q96HS1 289 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 ZNF599Q96NL3 588 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 FGF22Q9HCT0 170 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 SLC7A7Q9UM01 511 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 RABGAP1Q9Y3P9 1069 aa3.05□□□□□ -1.92
CLK1-204ENST00000432425 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.05□□□□□ -1.92
CLK1-204ENST00000432425 FRMD3A2A2Y4 597 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 OR6C76A6NM76 312 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 NDUFS4O43181 175 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 ARHGEF9O43307 516 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 ZNF500O60304 480 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 TPPPO94811 219 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 MBD4O95243 580 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 CD4P01730 458 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 PPP2R2BQ00005 443 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 PLA2G7Q13093 441 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 TMEM187Q14656 261 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 FAM109BQ6ICB4 259 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 STXBP4Q6ZWJ1 553 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 CRYBG2Q8N1P7 616 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 DBF4BQ8NFT6 615 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 SCFD2Q8WU76 684 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 DACH2Q96NX9 599 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 OPRPNQ99935 248 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 ITPAQ9BY32 194 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 LYVE1Q9Y5Y7 322 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 IGKV3D-20A0A0C4DH25 116 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 EPB41L2O43491 1005 aaKnown RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 EXTL3O43909 919 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 ZNF821O75541 412 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 EML2O95834 649 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 RB1P06400 928 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 CLTBP09497 229 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 ACADMP11310 421 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 CEACAM1P13688 526 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 PON1P27169 355 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 LUMP51884 338 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 CDH8P55286 799 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 CDH11P55287 796 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 SNRPEP62304 92 aaKnown RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 TUBB2AQ13885 445 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 GCNT6Q5T4J0 391 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 SNX30Q5VWJ9 437 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 FAAH2Q6GMR7 532 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 KIAA0930Q6ICG6 404 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 SCYL3Q8IZE3 742 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 DNAJC22Q8N4W6 341 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 SECISBP2LQ93073 1101 aaKnown RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 ZNF582Q96NG8 517 aaPredicted RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 TUBB2BQ9BVA1 445 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 WDR13Q9H1Z4 485 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 SLA2Q9H6Q3 261 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 MBNL1Q9NR56 388 aaKnown RBP3.04□□□□□ -1.92
CLK1-204ENST00000432425 CACNG5Q9UF02 275 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 FBXL17Q9UF56 701 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 PCDHGA5Q9Y5G8 931 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 RUSC2Q8N2Y8 1516 aa3.04□□□□□ -1.92
CLK1-204ENST00000432425 MYH15Q9Y2K3 1946 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 A0A087X0M5 115 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 A0A1B0GX30 115 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 MED19A0JLT2 244 aaPredicted RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 TCERG1O14776 1098 aaKnown RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 TRMUO75648 421 aaKnown RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 HMBSP08397 361 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 GABRB1P18505 474 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 NMBRP28336 390 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 CLK1P49759 484 aaKnown RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 LMOD3Q0VAK6 560 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 PRKAA1Q13131 559 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 SIM2Q14190 667 aaPredicted RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 CHST9Q7L1S5 443 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 WDTC1Q8N5D0 677 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 PPHLN1Q8NEY8 458 aaKnown RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 USP6NLQ92738 828 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 HDAC2Q92769 488 aaKnown RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 ZNF653Q96CK0 615 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 NSL1Q96IY1 281 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 LINC00479Q96M42 142 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 FTOQ9C0B1 505 aaKnown RBP eCLIP3.03□□□□□ -1.92
CLK1-204ENST00000432425 PELI2Q9HAT8 420 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 ZDHHC18Q9NUE0 388 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 PAG1Q9NWQ8 432 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 AMACRQ9UHK6 382 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 SPIN1Q9Y657 262 aaPredicted RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 PRSS21Q9Y6M0 314 aa3.03□□□□□ -1.92
CLK1-204ENST00000432425 TP53BP1Q12888 1972 aaPredicted RBP3.03□□□□□ -1.92
CLK1-204ENST00000432425 CLSPNQ9HAW4 1339 aa3.03□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms