RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 ASPDHA6ND91 283 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MEIS2O14770 477 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 TSPAN1O60635 241 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 LDB3O75112 727 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CSPG5O95196 566 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 TRUB2O95900 331 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 IGKV3-20P01619 116 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 LIPFP07098 398 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 SNRNP70P08621 437 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CETPP11597 493 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MCCP23508 829 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CPT2P23786 658 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 FMO5P49326 533 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 FUT6P51993 359 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CSE1LP55060 971 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CDH13P55290 713 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 GAGE2BQ13066 116 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 SNTB1Q13884 538 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 IL11RAQ14626 422 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MELKQ14680 651 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF718Q3SXZ3 478 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 GAGE2EQ4V326 116 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 SIRPB2Q5JXA9 342 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 GCNT6Q5T4J0 391 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 KRTAP5-11Q6L8G4 156 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 GAGE2AQ6NT46 116 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 TEX38Q6PEX7 206 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 FIGLAQ6QHK4 219 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 KCTD8Q6ZWB6 473 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ATG9AQ7Z3C6 839 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CAMKMTQ7Z624 323 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 IQCHQ86VS3 1027 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 LONP2Q86WA8 852 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 TC2NQ8N9U0 490 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 TSPAN14Q8NG11 270 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 OR6J1Q8NGC5 347 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 CFAP61Q8NHU2 1237 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 LNX1Q8TBB1 728 aaPredicted RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 SORCS1Q8WY21 1168 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MRPS27Q92552 414 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF653Q96CK0 615 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 PGAP3Q96FM1 320 aaPredicted RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ABHD8Q96I13 439 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 RADILQ96JH8 1075 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MS4A10Q96PG2 267 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 NEK1Q96PY6 1258 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 BAG1Q99933 345 aaPredicted RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 AP1M1Q9BXS5 423 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MOV10L1Q9BXT6 1211 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 VPS33BQ9H267 617 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 PPIL3Q9H2H8 161 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 EBF2Q9HAK2 575 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 UPF2Q9HAU5 1272 aaKnown RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 HHATLQ9HCP6 504 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ABCF3Q9NUQ8 709 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 HAO2Q9NYQ3 351 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 GAGE2DQ9UEU5 116 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ANAPC2Q9UJX6 822 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 FAF1Q9UNN5 650 aaPredicted RBP2.34□□□□□ -2.03
PTPRC-208ENST00000427110 DLGAP4Q9Y2H0 992 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF711Q9Y462 761 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 YIPF1Q9Y548 306 aa2.34□□□□□ -2.03
PTPRC-208ENST00000427110 MYO15BQ96JP2 1530 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 A0A0B4J293 547 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PRSS51A0A1B0GVH4 220 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ELOVL7A1L3X0 281 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PRAC2D3DTV9 90 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 C16orf97H3BN30 126 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 TO15178 435 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 XRCC3O43542 346 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 BUB3O43684 328 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 GPR137BO60478 399 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DKC1O60832 514 aaKnown RBP eCLIP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 TADA2AO75478 443 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CREG1O75629 220 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PSMD10O75832 226 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ATP1A1P05023 1023 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 TFAP2AP05549 437 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 H1F0P07305 194 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CSF2RAP15509 400 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PFKFB1P16118 471 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ZNF23P17027 643 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CKMT2P17540 419 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 AMD1P17707 334 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 GM2AP17900 193 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 DGKAP23743 735 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 EEF1DP29692 281 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 MC5RP33032 325 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ZNF75DP51815 510 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ZNF132P52740 706 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RPS18P62269 152 aaKnown RBP2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CDK3Q00526 305 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 MBTD1Q05BQ5 628 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RUNX1T1Q06455 604 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 TROAPQ12815 778 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 RALGDSQ12967 914 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 HSPB3Q12988 150 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 ALCAMQ13740 583 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 PSMD6Q15008 389 aa2.33□□□□□ -2.04
PTPRC-208ENST00000427110 CBWD6Q4V339 395 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms