RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 H2AFJQ9BTM1 129 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 ARRDC1-AS1Q9H2J1 176 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 MED4Q9NPJ6 270 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 MID2Q9UJV3 735 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 PRKAB1Q9Y478 270 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 NFS1Q9Y697 457 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 PRSS21Q9Y6M0 314 aa9.92□□□□□ -0.82
CD44-207ENST00000425428 CCDC189A1A4V9 331 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 IQCF5A8MTL0 148 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 MAP2K7O14733 419 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ZW10O43264 779 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ZBTB14O43829 449 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 SNX2O60749 519 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 GLRA3O75311 464 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 LMNAP02545 664 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 C1QAP02745 245 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 GSTA1P08263 222 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 LTA4HP09960 611 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 CCDC166P0CW27 439 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 PYGBP11216 843 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 KRT4P19013 534 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 AOAHP28039 575 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CDKN2DP55273 166 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 NEK10Q6ZWH5 1172 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 SLC22A18ASQ8N1D0 253 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CCDC63Q8NA47 563 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 C1orf216Q8TAB5 229 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 LMX1AQ8TE12 382 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 LINGO1Q96FE5 620 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ELF4Q99607 663 aaPredicted RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 COG4Q9H9E3 785 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CAB39LQ9H9S4 337 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 PCMTD2Q9NV79 361 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CTNNAL1Q9UBT7 734 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 GRID1Q9ULK0 1009 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 KCNK6Q9Y257 313 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ACTL7BQ9Y614 415 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 COLEC10Q9Y6Z7 277 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CACNA1EQ15878 2313 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 SYCE1LA8MT33 242 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ARHGAP33O14559 1287 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 PHGDHO43175 533 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 AQP9O43315 295 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CATP04040 527 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 WNT1P04628 370 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 C2P06681 752 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 C8GP07360 202 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 RBP1P09455 135 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 MPC1LP0DKB6 136 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ZNF37AP17032 561 aaPredicted RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 CYP2A7P20853 494 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 NDUFS1P28331 727 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 GCAP28676 217 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CCR7P32248 378 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CA5AP35218 305 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CCT8P50990 548 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CLCN7P51798 805 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CLCNKAP51800 687 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CTBSQ01459 385 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 DMPKQ09013 629 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 CSHL1Q14406 222 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 KIF19Q2TAC6 998 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ZNF542PQ5EBM4 170 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ZNF549Q6P9A3 640 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 SLC30A9Q6PML9 568 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 LVRNQ6Q4G3 990 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 PAQR3Q6TCH7 311 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 PNPLA1Q8N8W4 532 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 PHC3Q8NDX5 983 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 MCOLN3Q8TDD5 553 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 DUSP23Q9BVJ7 150 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 GTPBP2Q9BX10 602 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 TMEM168Q9H0V1 697 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 TMBIM4Q9HC24 238 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 KCNK9Q9NPC2 374 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 GPR27Q9NS67 375 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 TMEM74BQ9NUR3 256 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 NKIRAS1Q9NYS0 192 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 NOVA2Q9UNW9 492 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 RUVBL2Q9Y230 463 aaKnown RBP9.91□□□□□ -0.82
CD44-207ENST00000425428 SNX11Q9Y5W9 270 aa9.91□□□□□ -0.82
CD44-207ENST00000425428 ANKRD12Q6UB98 2062 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 KNL1Q8NG31 2342 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 GOLGA8RI6L899 631 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 KLHL2O95198 593 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 F7P08709 466 aaPredicted RBP9.9□□□□□ -0.82
CD44-207ENST00000425428 TAC1P20366 129 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CCNFP41002 786 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CTSKP43235 329 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 PPM1FP49593 454 aaPredicted RBP9.9□□□□□ -0.82
CD44-207ENST00000425428 GRIK2Q13002 908 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 EIF2B5Q13144 721 aaKnown RBP9.9□□□□□ -0.82
CD44-207ENST00000425428 NFE2L1Q14494 772 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 ZKSCAN8Q15776 578 aaPredicted RBP9.9□□□□□ -0.82
CD44-207ENST00000425428 METRNLQ641Q3 311 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 LAYNQ6UX15 382 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CMC1Q7Z7K0 106 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 ADAMTSL2Q86TH1 951 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 TRABD2AQ86V40 505 aa9.9□□□□□ -0.82
CD44-207ENST00000425428 CPNE9Q8IYJ1 553 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms