RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ADGRE3Q9BY15 652 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 DGCR6LQ9BY27 220 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 ASPSCR1Q9BZE9 553 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 OSBPL2Q9H1P3 480 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 BOLA1Q9Y3E2 137 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 ZNF98A6NK75 572 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 H3BMM5 538 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MTHFD1P11586 935 aaKnown RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 NPY2RP49146 381 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 TPMTP51580 245 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 PGDP52209 483 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 STARD3Q14849 445 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 SWI5Q1ZZU3 235 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 PAGE2Q7Z2X7 111 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 TIGD4Q8IY51 512 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 OR8H2Q8N162 312 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 DEPDC1BQ8WUY9 529 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 HTR3CQ8WXA8 447 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 CLEC4MQ9H2X3 399 aaPredicted RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 HPF1Q9NWY4 346 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MAN2B2Q9Y2E5 1009 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 hCG_1818297A0A087WSY0 165 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 OR5K4A6NMS3 321 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 NEMP1O14524 444 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 IGSF6O95976 241 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 SRCP12931 536 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ICAM2P13598 275 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 PTPN7P35236 360 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 PMS2P3Q13401 168 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 FBXO43Q4G163 708 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 UBR7Q8N806 425 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP54-205ENST00000424265 NECTIN4Q96NY8 510 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 GPR62Q9BZJ7 368 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 SMPD4Q9NXE4 827 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ZC3H7BQ9UGR2 993 aaKnown RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 BHMG1C9JSJ3 638 aaPredicted RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 TCEA3O75764 348 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 APOL3O95236 402 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 HOXB8P17481 243 aaPredicted RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 GATMP50440 423 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CLCQ05315 142 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ZNF697Q5TEC3 545 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 PDPK2PQ6A1A2 396 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 PIP5K1AQ99755 562 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 SMOQ99835 787 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 NPLQ9BXD5 320 aaPredicted RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 LRRC19Q9H756 370 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 COQ10BQ9H8M1 238 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 RAD18Q9NS91 495 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 INTS7Q9NVH2 962 aaKnown RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 FBXW11Q9UKB1 542 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 OR6C70A6NIJ9 312 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CCL16O15467 120 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 MAOBP27338 520 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 SERPINB9P50453 376 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CDH4P55283 916 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 RHOAP61586 193 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CYP4F8P98187 520 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ARHGEF7Q14155 803 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 LRRC57Q8N9N7 239 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 FAM71DQ8N9W8 422 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 UCK2Q9BZX2 261 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 MRM3Q9HC36 420 aaKnown RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 SCUBE2Q9NQ36 999 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 KIAA1217Q5T5P2 1943 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CASP8AP2Q9UKL3 1982 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 LRCH4O75427 683 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ITGAVP06756 1048 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 SERPINF2P08697 491 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 DDCP20711 480 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 PTPN5P54829 565 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 BTN1A1Q13410 526 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ARMCX4Q5H9R4 360 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 SLC8B1Q6J4K2 584 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CDH26Q8IXH8 852 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 TAB3Q8N5C8 712 aaPredicted RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 WFIKKN2Q8TEU8 576 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 ACDQ96AP0 544 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 TRIM43Q96BQ3 446 aaPredicted RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 TIFAQ96CG3 184 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 APOPT1Q96IL0 206 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 FCRL2Q96LA5 508 aaPredicted RBP9.68□□□□□ -0.86
USP54-205ENST00000424265 KCNK13Q9HB14 408 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 CPNE7Q9UBL6 633 aa9.68□□□□□ -0.86
USP54-205ENST00000424265 BNIP3LO60238 219 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PAGE1O75459 146 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 APRTP07741 180 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 CD247P20963 164 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 PSMA4P25789 261 aaKnown RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 PPM1FP49593 454 aaPredicted RBP9.67□□□□□ -0.86
USP54-205ENST00000424265 DGKQP52824 942 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 SLC18A1P54219 525 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 RING1Q06587 406 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 ZNF181Q2M3W8 571 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 FAM214AQ32MH5 1076 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 DGKKQ5KSL6 1271 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 MTSS1LQ765P7 747 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 SNX20Q7Z614 316 aa9.67□□□□□ -0.86
USP54-205ENST00000424265 KRT77Q7Z794 578 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms