RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CTSL3PQ5NE16 218 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 METRNLQ641Q3 311 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 STEAP4Q687X5 459 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 PTRHD1Q6GMV3 140 aaKnown RBP12.22□□□□□ -0.45
SKA1-203ENST00000417656 NAPRTQ6XQN6 538 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 CAPN12Q6ZSI9 719 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 TMPRSS7Q7RTY8 843 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 SDCCAG8Q86SQ7 713 aaPredicted RBP12.22□□□□□ -0.45
SKA1-203ENST00000417656 ZBED8Q8IZ13 594 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 LRRN4CLQ8ND94 238 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 FBXO25Q8TCJ0 367 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 ART4Q93070 314 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 CXorf40BQ96DE9 158 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 CERS2Q96G23 380 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 FAM167BQ9BTA0 163 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 SCNM1Q9BWG6 230 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 LRRN3Q9H3W5 708 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 SAYSD1Q9NPB0 183 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 FBXO6Q9NRD1 293 aaPredicted RBP12.22□□□□□ -0.45
SKA1-203ENST00000417656 IARS2Q9NSE4 1012 aaKnown RBP12.22□□□□□ -0.45
SKA1-203ENST00000417656 IMP3Q9NV31 184 aaKnown RBP12.22□□□□□ -0.45
SKA1-203ENST00000417656 SLC17A6Q9P2U8 582 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 CFAP20Q9Y6A4 193 aaKnown RBP12.22□□□□□ -0.45
SKA1-203ENST00000417656 C17orf113A0A1B0GUU1 675 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 D6RAR5 112 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 F8W8V4 182 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 NTN3O00634 580 aaPredicted RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 NIPSNAP2O75323 286 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 MT-CO3P00414 261 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 VIPP01282 170 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 GSTM1P09488 218 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 MTHFD1P11586 935 aaKnown RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 PNLIPP16233 465 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 XRCC1P18887 633 aaPredicted RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 PDHA2P29803 388 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 ALDH4A1P30038 563 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 FMO4P31512 558 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 MAPK9P45984 424 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 PDX1P52945 283 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 CSE1LP55060 971 aaKnown RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 GSTM4Q03013 218 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 CAV1Q03135 178 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 SPIDRQ14159 915 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 BRD3Q15059 726 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 AMZ1Q400G9 498 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 MAP9Q49MG5 647 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 CDCP2Q5VXM1 449 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 TRMT10BQ6PF06 316 aaKnown RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 CCDC25Q86WR0 208 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 TMPRSS12Q86WS5 348 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 LRRC6Q86X45 466 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 GALNT15Q8N3T1 639 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 AVL9Q8NBF6 648 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 CALML6Q8TD86 181 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 SEC14L1Q92503 715 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 C12orf66Q96MD2 445 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 INSM2Q96T92 566 aaPredicted RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 TCF12Q99081 682 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 SLC38A3Q99624 504 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 TSSK1BQ9BXA7 367 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 KRTAP3-3Q9BYR6 98 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 KRTAP3-2Q9BYR7 98 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 ZMYND15Q9H091 742 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 OR52A5Q9H2C5 316 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 EPB41L5Q9HCM4 733 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 POT1Q9NUX5 634 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 INTS10Q9NVR2 710 aaKnown RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 KCNK4Q9NYG8 393 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 DMGDHQ9UI17 866 aaKnown RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 FBXO5Q9UKT4 447 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 ACSL5Q9ULC5 683 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 ATXN7L1Q9ULK2 861 aaPredicted RBP12.21□□□□□ -0.45
SKA1-203ENST00000417656 CLCA2Q9UQC9 943 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 CRYL1Q9Y2S2 319 aa12.21□□□□□ -0.45
SKA1-203ENST00000417656 IGHV1OR21-1A0A087WYE8 117 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 BHMG1C9JSJ3 638 aaPredicted RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 LIN7AO14910 233 aaPredicted RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 PFDN6O15212 129 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 EIF3HO15372 352 aaKnown RBP eCLIP12.2□□□□□ -0.46
SKA1-203ENST00000417656 B4GAT1O43505 415 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 ZNF500O60304 480 aaPredicted RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 CSO75390 466 aaKnown RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 S1PR4O95977 384 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 CCR7P32248 378 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 CSF2RBP32927 897 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 GPR3P46089 330 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 PPM1FP49593 454 aaPredicted RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 SHC2P98077 582 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 GPR18Q14330 331 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 NKAIN2Q5VXU1 208 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 RBM44Q6ZP01 1051 aaKnown RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 TMEM26Q6ZUK4 368 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 PDZD3Q86UT5 571 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 LMNTD2Q8IXW0 634 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 WDR48Q8TAF3 677 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 JPH3Q8WXH2 748 aaPredicted RBP12.2□□□□□ -0.46
SKA1-203ENST00000417656 SH3KBP1Q96B97 665 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 FAM136AQ96C01 138 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 BIRC8Q96P09 236 aa12.2□□□□□ -0.46
SKA1-203ENST00000417656 DEPDC7Q96QD5 511 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms