RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SGSHP51688 502 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 CDH13P55290 713 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 IL2P60568 153 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 CACNG1Q06432 222 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 SRSF5Q13243 272 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 GEN1Q17RS7 908 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 KIF19Q2TAC6 998 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 TMEM196Q5HYL7 178 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 METTL3Q86U44 580 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 SPATA24Q86W54 205 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 PHYKPLQ8IUZ5 450 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 PNPLA1Q8N8W4 532 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 FUBP1Q96AE4 644 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 PDLIM5Q96HC4 596 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 GBP5Q96PP8 586 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 EFHD1Q9BUP0 239 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 TRIM15Q9C019 465 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 MUC13Q9H3R2 512 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 MAGEE1Q9HCI5 957 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 FBRSL1Q9HCM7 1045 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 GID8Q9NWU2 228 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 DUS2Q9NX74 493 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 NUDT4Q9NZJ9 180 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 FKBPLQ9UIM3 349 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 PACSIN3Q9UKS6 424 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 PKP3Q9Y446 797 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 ACTL7AQ9Y615 435 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 TCRBV3S1A0A5B6 114 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 EIF4E1BA6NMX2 242 aaKnown RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 GFRA2O00451 464 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 RNASEH1O60930 286 aaKnown RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 SIX3O95343 332 aaPredicted RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 ESRRBO95718 433 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 EGFP01133 1207 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 PRR35P0CG20 571 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 UROSP10746 265 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 HDCP19113 662 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 RPS3P23396 243 aaKnown RBP eCLIP14.59□□□□□ -0.07
USP4-203ENST00000415188 ZXDBP98169 803 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 RHDQ02161 417 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 FOLH1Q04609 750 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 PDK3Q15120 406 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 PDGFRLQ15198 375 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 TSNQ15631 228 aaKnown RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 LRRC36Q1X8D7 754 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 MAP7D1Q3KQU3 841 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 FAM217AQ8IXS0 508 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 DDIASQ8IXT1 998 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 PCDH20Q8N6Y1 951 aaKnown RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 DCAF4L2Q8NA75 395 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 OR56A4Q8NGH8 313 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 TRPC4APQ8TEL6 797 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 OSCP1Q8WVF1 389 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 EXOC2Q96KP1 924 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 C3orf30Q96M34 536 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 GPATCH1Q9BRR8 931 aaKnown RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 LINC00597Q9H2U6 94 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 SDR39U1Q9NRG7 319 aaPredicted RBP14.59□□□□□ -0.07
USP4-203ENST00000415188 ZNF711Q9Y462 761 aa14.59□□□□□ -0.07
USP4-203ENST00000415188 A0A0J9YYE9 177 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CXorf51AA0A1B0GTR3 108 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.58□□□□□ -0.08
USP4-203ENST00000415188 H0Y626 953 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 BTN3A1O00481 513 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 GIPC1O14908 333 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 HRO43593 1189 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 TSPAN3O60637 253 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 SNX2O60749 519 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 TSPAN12O95859 305 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CD160O95971 181 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 PRSS56P0CW18 603 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 IRF1P10914 325 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 MBL2P11226 248 aaPredicted RBP14.58□□□□□ -0.08
USP4-203ENST00000415188 TSPAN8P19075 237 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 SLC7A1P30825 629 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 GJA4P35212 333 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CSNK1DP48730 415 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 GALK1P51570 392 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CHN2P52757 468 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 RHOAP61586 193 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 GRSF1Q12849 480 aaKnown RBP eCLIP14.58□□□□□ -0.08
USP4-203ENST00000415188 BNIP2Q12982 314 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 ZRANB3Q5FWF4 1079 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CTSL3PQ5NE16 218 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 PAOXQ6QHF9 649 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 PRR23BQ6ZRT6 265 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 GPSM1Q86YR5 675 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 FUNDC1Q8IVP5 155 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 SYNPOQ8N3V7 929 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 MINDY1Q8N5J2 469 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CD200R1Q8TD46 325 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 ZUFSPQ96AP4 578 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 TUBGCP5Q96RT8 1024 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 ZNF382Q96SR6 550 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 CENPKQ9BS16 269 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 RNF38Q9H0F5 515 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 COPS7BQ9H9Q2 264 aaPredicted RBP14.58□□□□□ -0.08
USP4-203ENST00000415188 RIC8BQ9NVN3 520 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 IL17CQ9P0M4 197 aa14.58□□□□□ -0.08
USP4-203ENST00000415188 ABCD2Q9UBJ2 740 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms