RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 CLIC4Q9Y696 253 aa4.45□□□□□ -1.7
BRCA1-204ENST00000412061 DHX29Q7Z478 1369 aaKnown RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 ELOVL7A1L3X0 281 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CPED1A4D0V7 1026 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 DDTLA6NHG4 134 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 SDR42E2A6NKP2 422 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 H0YCG3 227 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 OVOL3O00110 214 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 AP3B1O00203 1094 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 VWA5AO00534 786 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 PPP6CO00743 305 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 IKBKBO14920 756 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 MOSPD3O75425 235 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TMCC1O94876 653 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 PDGFBP01127 241 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TPBGLP0DKB5 382 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 HSPA5P11021 654 aaKnown RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 PRG2P13727 222 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 NCF1P14598 390 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 SRD5A1P18405 259 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 SFNP31947 248 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CHRNA3P32297 505 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 FRKP42685 505 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 PITPNBP48739 271 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CENPAP49450 140 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CLCNKBP51801 687 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 ZNF75DP51815 510 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 HSPB3Q12988 150 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 ITGADQ13349 1161 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 KARSQ15046 597 aaKnown RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CCDC40Q4G0X9 1142 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 SGO1Q5FBB7 561 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 ZNF789Q5FWF6 425 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CEP78Q5JTW2 689 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 C1orf186Q6ZWK4 172 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CACNA2D4Q7Z3S7 1137 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TRIM74Q86UV6 250 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TRIM73Q86UV7 250 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TMEM173Q86WV6 379 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 OR52E1Q8NGJ3 308 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CTNNBL1Q8WYA6 563 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 RAB7BQ96AH8 199 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 SLC41A2Q96JW4 573 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CFAP53Q96M91 514 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 ZNF560Q96MR9 790 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 LRRC3BQ96PB8 259 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 KLHL5Q96PQ7 755 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 DDOQ99489 341 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 OLFM1Q99784 485 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 SLX1AQ9BQ83 275 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TCHPQ9BT92 498 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 PIGMQ9H3S5 423 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 COQ10BQ9H8M1 238 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 WDR6Q9NNW5 1121 aaKnown RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 NGBQ9NPG2 151 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 EQTNQ9NQ60 294 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 PRMT8Q9NR22 394 aaPredicted RBP4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TMEM45AQ9NWC5 275 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TMEM161AQ9NX61 479 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 FLRT1Q9NZU1 646 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 CCPG1Q9ULG6 757 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 WDR37Q9Y2I8 494 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 COX11Q9Y6N1 276 aa4.44□□□□□ -1.7
BRCA1-204ENST00000412061 TRBV5-7A0A0A0MS05 114 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 KIR2DS5A0A0G2JLQ3 304 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 KIR2DS3K7RE56 304 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SMAD9O15198 467 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 RNMTO43148 476 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 KLK8O60259 260 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 PRAMEF11O60813 436 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 PRDM1O75626 825 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 CREG1O75629 220 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 GH2P01242 217 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ICAM1P05362 532 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 C8orf89P0DMQ9 161 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 CTSAP10619 480 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SFTPCP11686 197 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 LBPP18428 481 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 EEF1B2P24534 225 aaKnown RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 MPGP29372 298 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ASMTP46597 345 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ACTR1AP61163 376 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 HNRNPKP61978 463 aaKnown RBP eCLIP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ID2Q02363 134 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 GCNT1Q02742 428 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ELP6Q0PNE2 266 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 UGCGQ16739 394 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 PNLIPRP3Q17RR3 467 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SHROOM1Q2M3G4 852 aaPredicted RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 C2orf68Q2NKX9 166 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 RABL6Q3YEC7 729 aaPredicted RBP4.43□□□□□ -1.7
BRCA1-204ENST00000412061 IQCCQ4KMZ1 466 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 SYTL3Q4VX76 610 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 MIDNQ504T8 468 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 TEX35Q5T0J7 233 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 PRAMEF8Q5VWM4 474 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 NEK5Q6P3R8 708 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 BRAT1Q6PJG6 821 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 ZNF793Q6ZN11 406 aa4.43□□□□□ -1.7
BRCA1-204ENST00000412061 TLK2Q86UE8 772 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms