RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GPAT3Q53EU6 434 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SSX6Q7RTT6 188 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ANKS1BQ7Z6G8 1248 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SAMD14Q8IZD0 417 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 GMCL1P1Q8NEA9 526 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ARL11Q969Q4 196 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SLC7A6OSQ96CW6 309 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PPP1R16BQ96T49 567 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TAS2R8Q9NYW2 309 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TSPAN16Q9UKR8 245 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 CSDE1O75534 798 aaKnown RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 TRUB2O95900 331 aaKnown RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 TGFB3P10600 412 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 PROZP22891 400 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 UQCRC1P31930 480 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 CPT1AP50416 773 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 GK3PQ14409 553 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 HEPACAMQ14CZ8 416 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 GPER1Q99527 375 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 SYT4Q9H2B2 425 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 AAASQ9NRG9 546 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 TRPV2Q9Y5S1 764 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 KIF13AQ9H1H9 1805 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 SPATA31A6Q5VVP1 1343 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 FAM205CA6NFA0 338 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 RXRBP28702 533 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 CSTF2P33240 577 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 NKX6-1P78426 367 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 BNIP3Q12983 259 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 FBXO47Q5MNV8 452 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 KLHL35Q6PF15 583 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 LPGAT1Q92604 370 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 C16orf58Q96GQ5 468 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 CREBL2O60519 120 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 OAZ2O95190 189 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 MTHFD1P11586 935 aaKnown RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 AKR1C8PQ5T2L2 129 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 HHIPL2Q6UWX4 724 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 ZSCAN1Q8NBB4 408 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 CNPPD1Q9BV87 410 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 NOS2P35228 1153 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF433Q8N7K0 673 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 LRTOMTQ8WZ04 291 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 ACSF2Q96CM8 615 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 PSKH2Q96QS6 385 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 MAPKAP1Q9BPZ7 522 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 NELFAQ9H3P2 528 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 C12orf71A8MTZ7 269 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 OIP5O43482 229 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 FCER2P06734 321 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 SAGP10523 405 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 HOXD8P13378 290 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 NRIP1P48552 1158 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 GBX2P52951 348 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 PAQR7Q86WK9 346 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 TSPEARQ8WU66 669 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 RPH3AQ9Y2J0 694 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 PER2O15055 1255 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 NDST1P52848 882 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 ARMC12Q5T9G4 340 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 BANPQ8N9N5 519 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 MYO19Q96H55 970 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 SLC7A8Q9UHI5 535 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 PPRC1Q5VV67 1664 aaKnown RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 NT5C1B-RDH14C9J2C7 533 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 ICAM1P05362 532 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 AXLP30530 894 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 RNASEH2BQ5TBB1 312 aaKnown RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 FAM131BQ86XD5 332 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 TNS4Q8IZW8 715 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 GEMIN6Q8WXD5 167 aaKnown RBP12.74□□□□□ -0.37
COL6A3-206ENST00000409809 AGAP2Q99490 1192 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 SPATA9Q9BWV2 254 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 FAM105AQ9NUU6 356 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 ADGRB2O60241 1585 aa12.74□□□□□ -0.37
COL6A3-206ENST00000409809 STK25O00506 426 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ENTPD3O75355 529 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 NR2C1P13056 603 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 OR1E1P30953 314 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 DNASE1L1P49184 302 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 WDR53Q7Z5U6 358 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 IFNL1Q8IU54 200 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 MTMR9Q96QG7 549 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ADAM10O14672 748 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 PPP5CP53041 499 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 NPTX1Q15818 432 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 SH3PXD2AQ5TCZ1 1133 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 DENND1CQ8IV53 801 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 BEST4Q8NFU0 473 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 MRPS33Q9Y291 106 aaKnown RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 GAKO14976 1311 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 NME6O75414 186 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 AGR2O95994 175 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 OR3A3P47888 321 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 OR3A2P47893 321 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 RNF44Q7L0R7 432 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 ATG9AQ7Z3C6 839 aa12.73□□□□□ -0.37
COL6A3-206ENST00000409809 MKRN2Q9H000 416 aaKnown RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 SLC33A1O00400 549 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-206ENST00000409809 POLR1CO15160 346 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms