RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SGCDQ92629 289 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ZNF599Q96NL3 588 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 DPY30Q9C005 99 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 SDR39U1Q9NRG7 319 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 INTS10Q9NVR2 710 aaKnown RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 IL17CQ9P0M4 197 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 CD300AQ9UGN4 299 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 RAB26Q9ULW5 256 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ZFC3H1O60293 1989 aaKnown RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 GBAP04062 536 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 NTRK1P04629 796 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ATXN8OSP0DMR3 200 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 BPIP17213 487 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ELK4P28324 431 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 HALP42357 657 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 DGKKQ5KSL6 1271 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 GALNT5Q7Z7M9 940 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 EPHX4Q8IUS5 362 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 MARVELD2Q8N4S9 558 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 FAM162AQ96A26 154 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 MYOCQ99972 504 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 RHBDL2Q9NX52 303 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 ANAPC2Q9UJX6 822 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 VWA8A3KMH1 1905 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 A0A1W2PP18 115 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 TEX28O15482 410 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 SNUPNO95149 360 aaKnown RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 CPSF4O95639 269 aaKnown RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 ZNF682O95780 498 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 EPOP01588 193 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 LMAN2Q12907 356 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 GPR107Q5VW38 600 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 LRRC66Q68CR7 880 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 SPESP1Q6UW49 350 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 BIRC7Q96CA5 298 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 APOLD1Q96LR9 279 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 MTERF1Q99551 399 aaKnown RBP13.17□□□□□ -0.3
VPS54-203ENST00000409558 ADI1Q9BV57 179 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 FAM192AQ9GZU8 254 aa13.17□□□□□ -0.3
VPS54-203ENST00000409558 VILLO15195 856 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 RAD51BO15315 384 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 ULK1O75385 1050 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 RGS4P49798 205 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 ENPP6Q6UWR7 440 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 PHYKPLQ8IUZ5 450 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 CHST14Q8NCH0 376 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 GPR26Q8NDV2 337 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 ITFG1Q8TB96 612 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 MRPS31Q92665 395 aaKnown RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 MRPL17Q9NRX2 175 aaKnown RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 TMEM39AQ9NV64 488 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 VAPAQ9P0L0 249 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 LHX3Q9UBR4 397 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 CDC14AQ9UNH5 594 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 OAS3Q9Y6K5 1087 aaKnown RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 PIKFYVEQ9Y2I7 2098 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 TRPM7Q96QT4 1865 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 TMEM189-UBE2V1I3L0A0 370 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 MLYCDO95822 493 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 IGHA2P01877 340 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 CR2P20023 1033 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 IRF5Q13568 498 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 RFTN1Q14699 578 aaPredicted RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 TYSND1Q2T9J0 566 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 ATP13A5Q4VNC0 1218 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 RETSATQ6NUM9 610 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 NCEH1Q6PIU2 408 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 SELENOMQ8WWX9 145 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 TMEM125Q96AQ2 219 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 MRPL40Q9NQ50 206 aaKnown RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 LEF1Q9UJU2 399 aaPredicted RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 PNMA8BQ9ULN7 279 aaPredicted RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 FADS3Q9Y5Q0 445 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 DGKBQ9Y6T7 804 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 SPIDRQ14159 915 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 MAPKAPK3Q16644 382 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 TRIM74Q86UV6 250 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 TTC30BQ8N4P2 665 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 LILRA3Q8N6C8 439 aaPredicted RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 GPR156Q8NFN8 814 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 HAUS8Q9BT25 410 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 FAM126AQ9BYI3 521 aaPredicted RBP13.16□□□□□ -0.3
VPS54-203ENST00000409558 LINC00597Q9H2U6 94 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 IKZF5Q9H5V7 419 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 HPS4Q9NQG7 708 aa13.16□□□□□ -0.3
VPS54-203ENST00000409558 ZNF236Q9UL36 1845 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 ALDH1A1P00352 501 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 LDLRP01130 860 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 RPS17P08708 135 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 CACNG1Q06432 222 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 NFATC2Q13469 925 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 SLC14A2Q15849 920 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 RHEBL1Q8TAI7 183 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 DGCR14Q96DF8 476 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 SPATA17Q96L03 361 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 C2orf49Q9BVC5 232 aaPredicted RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 MRPL9Q9BYD2 267 aaKnown RBP13.15□□□□□ -0.3
VPS54-203ENST00000409558 TRIM15Q9C019 465 aa13.15□□□□□ -0.3
VPS54-203ENST00000409558 ARMC7Q9H6L4 198 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms