RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 HOXD12P35452 270 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 TMED10P49755 219 aaKnown RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 EMX1Q04741 257 aaPredicted RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 FOXD4Q12950 439 aaPredicted RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 RAPSNQ13702 412 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 AP5B1Q2VPB7 878 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 NIPAL1Q6NVV3 410 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 DET1Q7L5Y6 550 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 ZNF598Q86UK7 904 aaKnown RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 UMODL1-AS1Q8N2C9 162 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 RAB2BQ8WUD1 216 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 SLC10A4Q96EP9 437 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 ITM2CQ9NQX7 267 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 SLC25A37Q9NYZ2 338 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 GNPTGQ9UJJ9 305 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 DEAF1O75398 565 aaPredicted RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 NDUFS3O75489 264 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 CHRNA1P02708 482 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 ALDH2P05091 517 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 ANXA6P08133 673 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 GSTT2P0CG29 244 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 GSTT2BP0CG30 244 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 ODC1P11926 461 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 CD52P31358 61 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 RPL38P63173 70 aaKnown RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 SLC13A2Q13183 592 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 FAM174BQ3ZCQ3 159 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 NCLNQ969V3 563 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 PRDM5Q9NQX1 630 aaPredicted RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 ADARB2Q9NS39 739 aaKnown RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 TAS2R13Q9NYV9 303 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 NOD1Q9Y239 953 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 TAF2Q6P1X5 1199 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 RHEBL1Q8TAI7 183 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 GLMNQ92990 594 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 ATP13A3Q9H7F0 1226 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 GSTA4O15217 222 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 RAMP2O60895 175 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 E2F6O75461 281 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 RAP2AP10114 183 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 UROSP10746 265 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 SLC2A4P14672 509 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 RAD51Q06609 339 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 ZNF235Q14590 738 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 SPANXN4Q5MJ08 99 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 IQSEC1Q6DN90 963 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 TMEM53Q6P2H8 277 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 MSRB3Q8IXL7 192 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 OR2T12Q8NG77 320 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 OR4F6Q8NGB9 312 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 BRINP2Q9C0B6 783 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 CCDC68Q9H2F9 335 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 MRGBPQ9NV56 204 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 CCL15-CCL14A0A0B4J2E2 113 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 FAM234BA2RU67 622 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 KRT87PA6NCN2 255 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 H0YAE9 185 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 SLC1A7O00341 560 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 PRAMEF12O95522 483 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 MYCLP1P12525 358 aaPredicted RBP20.66■□□□□ 0.9
CTCF-202ENST00000401394 BMP4P12644 408 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 KCNQ1P51787 676 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 IL5RAQ01344 420 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 CCL15Q16663 113 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 FAM98BQ52LJ0 330 aaKnown RBP20.66■□□□□ 0.9
CTCF-202ENST00000401394 CTSL3PQ5NE16 218 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 BRI3BPQ8WY22 251 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 ACTR8Q9H981 624 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 HPS4Q9NQG7 708 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 SLCO3A1Q9UIG8 710 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 POU2F3Q9UKI9 436 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 COMMD10Q9Y6G5 202 aa20.66■□□□□ 0.9
CTCF-202ENST00000401394 FAM92AA1XBS5 289 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 GGT1P19440 569 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 GSTM2P28161 218 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 ISL1P61371 349 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 AASDHQ4L235 1098 aaPredicted RBP20.65■□□□□ 0.9
CTCF-202ENST00000401394 CXCL17Q6UXB2 119 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 RSPH1Q8WYR4 309 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 IQCA1LA6NCM1 817 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 NADKO95544 446 aaPredicted RBP20.65■□□□□ 0.9
CTCF-202ENST00000401394 CD6P30203 668 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 CYP2C18P33260 490 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 SUOXP51687 545 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 ZNF135P52742 658 aaPredicted RBP20.65■□□□□ 0.9
CTCF-202ENST00000401394 KCNC4Q03721 635 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 FOXM1Q08050 763 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 OXA1LQ15070 435 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 MBOAT1Q6ZNC8 495 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 SPATA19Q7Z5L4 167 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 GPSM1Q86YR5 675 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 NETO1Q8TDF5 533 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 SLC47A1Q96FL8 570 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 OSBPL10Q9BXB5 764 aa20.65■□□□□ 0.9
CTCF-202ENST00000401394 GPN2Q9H9Y4 310 aaPredicted RBP20.65■□□□□ 0.9
CTCF-202ENST00000401394 LOC100130705A0A1B0GUX0 176 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 HTR3EA5X5Y0 456 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 PCMT1P22061 227 aa20.64■□□□□ 0.9
CTCF-202ENST00000401394 SKIV2LQ15477 1246 aaKnown RBP20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms