RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ADSLP30566 484 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-203ENST00000394269 SLC6A11P48066 632 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 NEK2P51955 445 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 AQP4P55087 323 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 NFYCQ13952 458 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 DHCR24Q15392 516 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 CCDC85BQ15834 202 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-203ENST00000394269 IMPG1Q17R60 797 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 SFT2D3Q587I9 215 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 C6orf10Q5SRN2 563 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 ANO7Q6IWH7 933 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 FAM43BQ6ZT52 329 aaPredicted RBP10.95□□□□□ -0.66
TCOF1-203ENST00000394269 SFTPA1Q8IWL2 248 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 ELMO1Q92556 727 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 ECSITQ9BQ95 431 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 ACTR8Q9H981 624 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 RNF11Q9Y3C5 154 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 SNX13Q9Y5W8 968 aa10.95□□□□□ -0.66
TCOF1-203ENST00000394269 HIST1H2AGP0C0S8 130 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 HIST1H2ADP20671 130 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 GRIA3P42263 894 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 NRIP1P48552 1158 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 SPINT3P49223 89 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 DGKQP52824 942 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 RPL26P61254 145 aaKnown RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 KLC1Q07866 573 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 LRP8Q14114 963 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 CDKN3Q16667 212 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 AP5B1Q2VPB7 878 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 TTLL9Q3SXZ7 439 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 RABL3Q5HYI8 236 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 DNAJC14Q6Y2X3 702 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 UBE2R2Q712K3 238 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 AMIGO2Q86SJ2 522 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 KBTBD6Q86V97 674 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 C12orf40Q86WS4 652 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 VRK3Q8IV63 474 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 CDC26Q8NHZ8 85 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 JADE3Q92613 823 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 SPDL1Q96EA4 605 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 HIST1H2AHQ96KK5 128 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 HIST1H2AJQ99878 128 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 H2AFJQ9BTM1 129 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 TBC1D14Q9P2M4 693 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 MAP1BP46821 2468 aaKnown RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 LOC730098B7Z3J9 87 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 STX16O14662 325 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 PENKP01210 267 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 C1SP09871 688 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 OR56A5P0C7T3 313 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 PSMC3P17980 439 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 WASP42768 502 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 RPL38P63173 70 aaKnown RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 B4GALNT1Q00973 533 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 DDX39BQ13838 428 aaKnown RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 NRF1Q16656 503 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 C6orf136Q5SQH8 315 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 IL23RQ5VWK5 629 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 GET4Q7L5D6 327 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 LMNTD1Q8N9Z9 388 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 ICA1LQ8NDH6 482 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 TMEM74Q96NL1 305 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 HTATIP2Q9BUP3 242 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 KLHL4Q9C0H6 718 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 ZDHHC3Q9NYG2 299 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 MAFFQ9ULX9 164 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 POLR3HQ9Y535 204 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 CHD5Q8TDI0 1954 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 ZNF839A8K0R7 811 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 UPK3BL1B0FP48 263 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 UPK3BL2E5RIL1 263 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 TRIM38O00635 465 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 SLC22A3O75751 556 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 G6PDP11413 515 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 PAX7P23759 505 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 GPR33Q49SQ1 333 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 RFTN2Q52LD8 501 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 FNDC3BQ53EP0 1204 aaKnown RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 METTL3Q86U44 580 aaKnown RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 LILRA3Q8N6C8 439 aaPredicted RBP10.94□□□□□ -0.66
TCOF1-203ENST00000394269 RIC8BQ9NVN3 520 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 NUDT4Q9NZJ9 180 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 SUFUQ9UMX1 484 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 ATG2BQ96BY7 2078 aa10.94□□□□□ -0.66
TCOF1-203ENST00000394269 CARNS1A5YM72 827 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 CCDC154A6NI56 674 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 TAPBPO15533 448 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SEC22BO75396 215 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 IDO1P14902 403 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 MSH3P20585 1137 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 GPM6BQ13491 265 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 TRIM25Q14258 630 aaKnown RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PTGR1Q14914 329 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 HERC3Q15034 1050 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 C9orf50Q5SZB4 431 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 AAGABQ6PD74 315 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 PSRC1Q6PGN9 363 aaPredicted RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 Q6ZSR9 355 aa10.93□□□□□ -0.66
TCOF1-203ENST00000394269 RALGPS2Q86X27 583 aaPredicted RBP10.93□□□□□ -0.66
TCOF1-203ENST00000394269 SPPL2CQ8IUH8 684 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms