RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EXT2Q93063 718 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 SLC30A3Q99726 388 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 RTKNQ9BST9 563 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 CYP4F12Q9HCS2 524 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 GALPQ9UBC7 116 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 NCKAP1Q9Y2A7 1128 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 TRPC5OSA6NMA1 111 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 FADS2P1A8MWK0 482 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 ATG13O75143 517 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 PCDH8O95206 1070 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 THRAP10827 490 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 ACADSP16219 412 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 ITGB6P18564 788 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 DRD3P35462 400 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 CCR3P51677 355 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 B4GALNT1Q00973 533 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 HERC3Q15034 1050 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 ARL13AQ5H913 290 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 AGBL4Q5VU57 503 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 KIAA1161Q6NSJ0 714 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 HOMEZQ8IX15 550 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 PTGR2Q8N8N7 351 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 PPFIBP2Q8ND30 876 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 ACTRT2Q8TDY3 377 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 ASZ1Q8WWH4 475 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 FAM3CQ92520 227 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 JADE3Q92613 823 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 EZH1Q92800 747 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 FUBP1Q96AE4 644 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 PHF21BQ96EK2 531 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 LRCH3Q96II8 777 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 CDX2Q99626 313 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 THTPAQ9BU02 230 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 TMPRSS11EQ9UL52 423 aa17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 TNPO3Q9Y5L0 923 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-203ENST00000389856 UBXN8O00124 270 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 NCF2P19878 526 aaPredicted RBP17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 ATP6V1C1P21283 382 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 CA5AP35218 305 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 AP2B1P63010 937 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 BTKQ06187 659 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 KLF10Q13118 480 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 AGERQ15109 404 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 PFKFB4Q16877 469 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 ZNF678Q5SXM1 525 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 ATG14Q6ZNE5 492 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 FRMD7Q6ZUT3 714 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 NEK10Q6ZWH5 1172 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 ADGRG6Q86SQ4 1221 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 MYLK4Q86YV6 388 aaPredicted RBP17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 AADATQ8N5Z0 425 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 WDR60Q8WVS4 1066 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 NAF1Q96HR8 494 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 TRIM54Q9BYV2 358 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 FBXL12Q9NXK8 326 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 NDE1Q9NXR1 346 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 CD274Q9NZQ7 290 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 FZD4Q9ULV1 537 aa17.89■□□□□ 0.45
CCDC88C-203ENST00000389856 PIKFYVEQ9Y2I7 2098 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 A0A1W2PP55 124 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 NEMP2A6NFY4 417 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 CDC7O00311 574 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 PLK4O00444 970 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 VEGFDO43915 354 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 KLK8O60259 260 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 SUPT7LO94864 414 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 C8GP07360 202 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 ENO2P09104 434 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 MPC1LP0DKB6 136 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 COX4I1P13073 169 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 AOAHP28039 575 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 TEAD1P28347 426 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 RPS21P63220 83 aaKnown RBP17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 SYTL3Q4VX76 610 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 CDKL4Q5MAI5 379 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 ANKS6Q68DC2 871 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 PTCRAQ6ISU1 281 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 PGM2L1Q6PCE3 622 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 ADAMTSL4Q6UY14 1074 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 USP30Q70CQ3 517 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 N4BP2L2Q92802 583 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 ZNF570Q96NI8 536 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 SLC7A8Q9UHI5 535 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 CDYLQ9Y232 598 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 CDH23Q9H251 3354 aa17.88■□□□□ 0.45
CCDC88C-203ENST00000389856 A0A088AWK7 358 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 H0Y3Z8 333 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SLC16A5O15375 505 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 NVLO15381 856 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 NUAK1O60285 661 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 KRT36O76013 467 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 ACADMP11310 421 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 TMEM115Q12893 351 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SP140Q13342 867 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 LRRK1Q38SD2 2015 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SLC9B1Q4ZJI4 515 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 SLC44A4Q53GD3 710 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 C1orf146Q5VVC0 180 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 NEK5Q6P3R8 708 aa17.87■□□□□ 0.45
CCDC88C-203ENST00000389856 RIPOR1Q6ZS17 1223 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms