RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LDHDQ86WU2 507 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 NRROSQ86YC3 692 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SERPINA12Q8IW75 414 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 C4orf33Q8N1A6 199 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MARVELD2Q8N4S9 558 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF439Q8NDP4 499 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 EPS8L1Q8TE68 723 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PARD3Q8TEW0 1356 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SPRYD4Q8WW59 207 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MRPL38Q96DV4 380 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MAGEB18Q96M61 343 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PFDN5Q99471 154 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TLR10Q9BXR5 811 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TPK1Q9H3S4 243 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SLAMF7Q9NQ25 335 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 DDX18Q9NVP1 670 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PCDHA6Q9UN73 950 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 AAR2Q9Y312 384 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PCDHB5Q9Y5E4 795 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PCDHA8Q9Y5H6 950 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 AURKAO14965 403 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF821O75541 412 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 HLA-FP30511 346 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 LSAMPQ13449 338 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ACSM2BQ68CK6 577 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TAPT1Q6NXT6 567 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MAMDC4Q6UXC1 1216 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 GDPD4Q6W3E5 623 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SLC29A4Q7RTT9 530 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SLC41A1Q8IVJ1 513 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM145Q8NBT3 493 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PLA2G15Q8NCC3 412 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 GPRC5AQ8NFJ5 357 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF566Q969W8 418 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CENPNQ96H22 339 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 DCAF5Q96JK2 942 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 DDX47Q9H0S4 455 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PCDH9Q9HC56 1237 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 VANGL2Q9ULK5 521 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PTCH2Q9Y6C5 1203 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RP1L1Q8IWN7 2480 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 GAKO14976 1311 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 MTMR11A4FU01 709 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 LRRC72A6NJI9 287 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CHL1O00533 1208 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 KIAA0355O15063 1070 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 AP5Z1O43299 807 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 ADAM20O43506 726 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CPNE3O75131 537 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CDH16O75309 829 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TSPAN8P19075 237 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 GLDCP23378 1020 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 S100A3P33764 101 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CLRN1P58418 232 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TAF9Q16594 264 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 XKR6Q5GH73 641 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 SFRP4Q6FHJ7 346 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 KCTD9Q7L273 389 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 DOK3Q7L591 496 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF598Q86UK7 904 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 FAM83AQ86UY5 434 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 GSTCDQ8NEC7 633 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 SLC35G2Q8TBE7 412 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 NANPQ8TBE9 248 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 BPIFB1Q8TDL5 484 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CREB3L1Q96BA8 519 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 NSMCE3Q96MG7 304 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 HSPA12BQ96MM6 686 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 PLEKHG4BQ96PX9 1271 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF607Q96SK3 696 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 MXD3Q9BW11 206 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM185BQ9H7F4 350 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 EXD2Q9NVH0 621 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CXXC1Q9P0U4 656 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 DLGAP2Q9P1A6 1054 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TFR2Q9UP52 801 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 H0YIV9 168 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 K7EPK0 472 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CYB561D2O14569 222 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 POLR1CO15160 346 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 GATCO43716 136 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 AP1G1O43747 822 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 GCGP01275 180 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 SPATA31D3P0C874 917 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 ZNF7P17097 686 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 ITPKAP23677 461 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 PITPNBP48739 271 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 HCAR3P49019 387 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 RRP1BQ14684 758 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 UBE3CQ15386 1083 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 DESI1Q6ICB0 168 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TNFAIP8L2Q6P589 184 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 TMEM71Q6P5X7 295 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 SPATA31D4Q6ZUB0 917 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 NLRP8Q86W28 1048 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 FAM71E2Q8N5Q1 922 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 CPSF7Q8N684 471 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 PCSK9Q8NBP7 692 aaKnown RBP4.59□□□□□ -1.68
SCN1A-202ENST00000375405 BPIFB6Q8NFQ5 453 aa4.59□□□□□ -1.68
SCN1A-202ENST00000375405 SPPL2BQ8TCT7 592 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms