RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 PDSS2Q86YH6 399 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 HPS6Q86YV9 775 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 SIDT2Q8NBJ9 832 aaKnown RBP8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 ZNF784Q8NCA9 323 aaPredicted RBP8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 DDHD1Q8NEL9 900 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 SHKBP1Q8TBC3 707 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 SPPL3Q8TCT6 385 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 AGR3Q8TD06 166 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 N4BP2L2Q92802 583 aaPredicted RBP8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 ATP6V1E2Q96A05 226 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 RAB7BQ96AH8 199 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 FAM136AQ96C01 138 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 MYCBPQ99417 103 aaPredicted RBP8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 OSBPL10Q9BXB5 764 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 FAM83DQ9H4H8 585 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 SLC32A1Q9H598 525 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 TRPV4Q9HBA0 871 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 DZANK1Q9NVP4 752 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 PLK2Q9NYY3 685 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 GDE1Q9NZC3 331 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 CCDC167Q9P0B6 97 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 AP4S1Q9Y587 144 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 ST14Q9Y5Y6 855 aa8.58□□□□□ -1.04
SNRNP40-202ENST00000373720 ZNF106Q9H2Y7 1883 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 DENND4CQ5VZ89 1909 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 C17orf113A0A1B0GUU1 675 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 PRSS51A0A1B0GVH4 220 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 TCRBV3S1A0A5B6 114 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 TTC24A2A3L6 582 aaPredicted RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CCDC154A6NI56 674 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 GFYI3L273 518 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CDC7O00311 574 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 BUD23O43709 281 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 NIPSNAP2O75323 286 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ULK1O75385 1050 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CLDN7O95471 211 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CLDN9O95484 217 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 MT-CO1P00395 513 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 TYRP14679 529 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 UQCRBP14927 111 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 DDX5P17844 614 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 IL1RNP18510 177 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 XPAP23025 273 aaPredicted RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 AOAHP28039 575 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 AKT1P31749 480 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CD70P32970 193 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 GNPDA1P46926 289 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ZXDBP98169 803 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CYP4F8P98187 520 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CREB5Q02930 508 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 BOP1Q14137 746 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 SMAD1Q15797 465 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ZNF284Q2VY69 593 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ACCSLQ4AC99 568 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 PRSS36Q5K4E3 855 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 C6orf136Q5SQH8 315 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ATXN7L2Q5T6C5 722 aaPredicted RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 LIPJQ5W064 366 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CAPRIN2Q6IMN6 1127 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 LCN8Q6JVE9 175 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 FAM151BQ6UXP7 276 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 DPPA4Q7L190 304 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 CPNE9Q8IYJ1 553 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 OR8J3Q8NGG0 315 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 FBXO27Q8NI29 283 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 SLC22A17Q8WUG5 538 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 OSCP1Q8WVF1 389 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 UCMAQ8WVF2 138 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 POF1BQ8WVV4 589 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ASB11Q8WXH4 323 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 RHBDF1Q96CC6 855 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 LRRC58Q96CX6 371 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 SPDL1Q96EA4 605 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 FOPNLQ96NB1 174 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ZNF570Q96NI8 536 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 TM6SF2Q9BZW4 377 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 IPPKQ9H8X2 491 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 GEMIN8Q9NWZ8 242 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 GPRC5BQ9NZH0 403 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ADA2Q9NZK5 511 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 INTS6Q9UL03 887 aaKnown RBP8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 ERVW-1Q9UQF0 538 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 OBSL1O75147 1896 aa8.57□□□□□ -1.04
SNRNP40-202ENST00000373720 GBF1Q92538 1859 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 NPEPPSL1A6NEC2 478 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 UPK3BL1B0FP48 263 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 GPR89AB7ZAQ6 455 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 UPK3BL2E5RIL1 263 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 CCL22O00626 93 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 GAPDHSO14556 408 aaPredicted RBP8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 SMAD6O43541 496 aaKnown RBP8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 KIF1CO43896 1103 aaKnown RBP8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 OR1I1O60431 355 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 SYNCRIPO60506 623 aaKnown RBP8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 TULP3O75386 442 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 RSL1D1O76021 490 aaKnown RBP8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 SLCO2B1O94956 709 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 RPSAP08865 295 aaKnown RBP8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 GPR89BP0CG08 455 aa8.56□□□□□ -1.04
SNRNP40-202ENST00000373720 BMP2P12643 396 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms