RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GSSP48637 474 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF140P52738 457 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 VAC14Q08AM6 782 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GTF2H3Q13889 308 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 KCNA10Q16322 511 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SPANXN4Q5MJ08 99 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ATXN7L2Q5T6C5 722 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GALNT10Q86SR1 603 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ZFAND4Q86XD8 727 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 TANKQ92844 425 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 BORCS5Q969J3 196 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 NRBF2Q96F24 287 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 BOCQ9BWV1 1114 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GPR62Q9BZJ7 368 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 LATS2Q9NRM7 1088 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 PKP3Q9Y446 797 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GMEB1Q9Y692 573 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 UPK3BL1B0FP48 263 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 MYO1GB0I1T2 1018 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 UPK3BL2E5RIL1 263 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 TBC1D4O60343 1298 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF623O75123 536 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 DIRAS1O95057 198 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ENO2P09104 434 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 CDH1P12830 882 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 HOXD9P28356 352 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 HLCSP50747 726 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ADARB1P78563 741 aaKnown RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GTF2H2Q13888 395 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 NKG7Q16617 165 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 MAPKAPK3Q16644 382 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SULT1C3Q6IMI6 304 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GTF2H2CQ6P1K8 395 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 DLEU7Q6UYE1 221 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 RNF19BQ6ZMZ0 732 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 THAP5Q7Z6K1 395 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 PROSER1Q86XN7 944 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF555Q8NEP9 628 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GPR150Q8NGU9 434 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 CIPCQ9C0C6 399 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 FAIMQ9NVQ4 179 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 PCDHB3Q9Y5E6 796 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 DUSP11O75319 330 aaKnown RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 UMPSP11172 480 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 TYMPP19971 482 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 DCKP27707 260 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 HTR1EP28566 365 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 GKP32189 559 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ALDH3A2P51648 485 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SUOXP51687 545 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 RAD23AP54725 363 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 IL5RAQ01344 420 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 FOXM1Q08050 763 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SIM2Q14190 667 aaPredicted RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 CPSF6Q16630 551 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 EGFLAMQ63HQ2 1017 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ALDH16A1Q8IZ83 802 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 CENPSQ8N2Z9 138 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ULK4Q96C45 1275 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SLC47A1Q96FL8 570 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 MYOCQ99972 504 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 DPY30Q9C005 99 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ARHGAP39Q9C0H5 1083 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 TRNAU1APQ9NX07 287 aaKnown RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 VPS4AQ9UN37 437 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SLC45A1Q9Y2W3 748 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 COQ6Q9Y2Z9 468 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 ST14Q9Y5Y6 855 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SH3BGRLO75368 114 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 TSPAN12O95859 305 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 PRLP01236 227 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 RAP2AP10114 183 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 MYCLP1P12525 358 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 MLLT10P55197 1068 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 YBEYP58557 167 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ACVR1Q04771 509 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 KCNAB2Q13303 367 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 TYSND1Q2T9J0 566 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 XKR7Q5GH72 579 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 CLLU1OSQ5K130 101 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 RNF219Q5W0B1 726 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ZNF773Q6PK81 442 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 Q6ZNX1 250 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 BTLAQ7Z6A9 289 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 GALNT7Q86SF2 657 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 PTRH1Q86Y79 214 aaKnown RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 CNIH3Q8TBE1 160 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 SLC22A17Q8WUG5 538 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 LZICQ8WZA0 190 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ZBTB18Q99592 522 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ACTR8Q9H981 624 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 WWOXQ9NZC7 414 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 MAGEL2Q9UJ55 1249 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 SNX5Q9Y5X3 404 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 H0Y858 1186 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 ZSCAN9O15535 394 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 MITFO75030 526 aaPredicted RBP11.94□□□□□ -0.5
CLIP3-201ENST00000360535 INMTO95050 263 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 FTH1P02794 183 aa11.94□□□□□ -0.5
CLIP3-201ENST00000360535 EFNA1P20827 205 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms