RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 DFFAO00273 331 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 KLK10O43240 276 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 USP1O94782 785 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LUC7L3O95232 432 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 PEX11BO96011 259 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 MT-CO3P00414 261 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 IGHV4-34P06331 123 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 POLBP06746 335 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 GP1BBP13224 206 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 CKMT2P17540 419 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 ACP1P24666 158 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 PSMB4P28070 264 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 OR1E1P30953 314 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LMAN1P49257 510 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 SERPINB9P50453 376 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 PAPOLAP51003 745 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 ERVPABLB-1P60509 514 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 GABREP78334 506 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 GNA12Q03113 381 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 ZBTB17Q13105 803 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 SLC12A1Q13621 1099 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 POLD3Q15054 466 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 INO80DQ53TQ3 878 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LGSNQ5TDP6 509 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 MARC1Q5VT66 337 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 RAP1GAP2Q684P5 730 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 INO80CQ6PI98 192 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 SERPINA13PQ6UXR4 307 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 NLRP9Q7RTR0 991 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 C14orf80Q86SX3 495 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TMEM135Q86UB9 458 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LRRC6Q86X45 466 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 PALM2Q8IXS6 379 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LMNTD2Q8IXW0 634 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LSMEM2Q8N112 164 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TAB3Q8N5C8 712 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 LINC01356Q8N9X3 169 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 DCAF4L2Q8NA75 395 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TP53I13Q8NBR0 393 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 CDKL2Q92772 493 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 SKA1Q96BD8 255 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TADA1Q96BN2 335 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 CENPTQ96BT3 561 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 STAMBPL1Q96FJ0 436 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 IMP4Q96G21 291 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 C9orf72Q96LT7 481 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 PSKH2Q96QS6 385 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TM9SF2Q99805 663 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 WDR83Q9BRX9 315 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 SLC39A8Q9C0K1 460 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 POLR1EQ9GZS1 481 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 PDFQ9HBH1 243 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 GLOD4Q9HC38 313 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 GP6Q9HCN6 339 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 MKS1Q9NXB0 559 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 SAMD15Q9P1V8 674 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 ADAM21Q9UKJ8 722 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 AGO1Q9UL18 857 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 RIMKLBQ9ULI2 386 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 MFHAS1Q9Y4C4 1052 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 GOLGA4Q13439 2230 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TMEM131Q92545 1883 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 IQANK1A0A1B0GTG1 560 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 A0A1W2PPC4 97 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 TCRBV7S3A2A0A539 114 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 FAM159BA6NKW6 160 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 NEBLO76041 1014 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 JCHAINP01591 159 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 SHBGP04278 402 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 WNT1P04628 370 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 TP53P04637 393 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 HLA-DPA1P20036 260 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 CA4P22748 312 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 HOXD9P28356 352 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ADRA1AP35348 466 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 HADHAP40939 763 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ELK3P41970 407 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ARRB1P49407 418 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 GPX6P59796 221 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 PPP2R2AP63151 447 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ZBTB16Q05516 673 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 SLC20A2Q08357 652 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 NSUN2Q08J23 767 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF177Q13360 481 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 FASTKD3Q14CZ7 662 aaKnown RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 TERF2Q15554 542 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 TTC31Q49AM3 519 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 MPPE1Q53F39 396 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 ALFQ53S48 1182 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 SPANXN3Q5MJ09 141 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 PRAMEF14Q5SWL7 426 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 FNBP1LQ5T0N5 605 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 KIAA0895LQ68EN5 471 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 UNC5AQ6ZN44 842 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 C3orf62Q6ZUJ4 267 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 MARK2Q7KZI7 788 aaKnown RBP6.92□□□□□ -1.3
VPS13A-201ENST00000355766 KANSL1Q7Z3B3 1105 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 GALNT7Q86SF2 657 aa6.92□□□□□ -1.3
VPS13A-201ENST00000355766 PRUNE1Q86TP1 453 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms