RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 B4GALNT2Q8NHY0 566 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SNX21Q969T3 373 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 C3orf49Q96BT1 292 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 RDH14Q9HBH5 336 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CNTN3Q9P232 1028 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 FAM96BQ9Y3D0 163 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 NOTCH2Q04721 2471 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 NARSO43776 548 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 RPL4P36578 427 aaKnown RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 HIF1AQ16665 826 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SCAMP5Q8TAC9 235 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 THAP3Q8WTV1 239 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TUBGCP5Q96RT8 1024 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM168Q9H0V1 697 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 DNAJC18Q9H819 358 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 BLOC1S4Q9NUP1 217 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 LUZP4Q9P127 313 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 BTRCQ9Y297 605 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 A0A1B0GUH1 482 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TRIM49BA6NDI0 452 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 SDR42E2A6NKP2 422 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF806P0C7X5 589 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 PIRTP0C851 137 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ARHGAP25P42331 645 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 KLRB1Q12918 225 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 MAD2L1Q13257 205 aaPredicted RBP8.28□□□□□ -1.08
HMGB1-203ENST00000341423 CAMK1Q14012 370 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 PTPRNQ16849 979 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 IYDQ6PHW0 289 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 OPN5Q6U736 354 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 C12orf29Q8N999 325 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 GLIS3Q8NEA6 775 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ST7LQ8TDW4 575 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 ADAMTS18Q8TE60 1221 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 FBXW5Q969U6 566 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 BTBD6Q96KE9 485 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 OR6C1Q96RD1 312 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 TBC1D10AQ9BXI6 508 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 OSBPL8Q9BZF1 889 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 OSER1Q9NX31 292 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 PPP4R1LQ9P1A2 415 aa8.28□□□□□ -1.08
HMGB1-203ENST00000341423 XKRYO14609 159 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 KCNH1O95259 989 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 C8GP07360 202 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 GCH1P30793 250 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 P2RY2P41231 377 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 IRF9Q00978 393 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 GALNT3Q14435 633 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 FAM187BQ17R55 369 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 PGS1Q32NB8 556 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 SLC10A6Q3KNW5 377 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 LSM12Q3MHD2 195 aaKnown RBP8.27□□□□□ -1.08
HMGB1-203ENST00000341423 RALGPS1Q5JS13 557 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 KCNT1Q5JUK3 1230 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 XKR5Q6UX68 686 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 ADAMTSL2Q86TH1 951 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 CRLF3Q8IUI8 442 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 ARL10Q8N8L6 244 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 KIAA0895Q8NCT3 520 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 LNX1Q8TBB1 728 aaPredicted RBP8.27□□□□□ -1.08
HMGB1-203ENST00000341423 KCNN1Q92952 543 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 XPO4Q9C0E2 1151 aaKnown RBP8.27□□□□□ -1.08
HMGB1-203ENST00000341423 CDH20Q9HBT6 801 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 PRTFDC1Q9NRG1 225 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 C3orf18Q9UK00 162 aa8.27□□□□□ -1.08
HMGB1-203ENST00000341423 ALOX15BO15296 676 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 BCL10O95999 233 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 FGGP02679 453 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 CXCL10P02778 98 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ABCB1P08183 1280 aaPredicted RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 GSPT1P15170 499 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 UCHL3P15374 230 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 CSRP1P21291 193 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 SLC26A3P40879 764 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 NDST2P52849 883 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 TARDBPQ13148 414 aaKnown RBP eCLIP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ILKQ13418 452 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF771Q7L3S4 317 aaPredicted RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 TMPRSS11BQ86T26 416 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 GPSM1Q86YR5 675 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 RNF10Q8N5U6 811 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 KCT2Q8NC54 265 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 CCDC54Q8NEL0 328 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 BACH2Q9BYV9 841 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 LRRN3Q9H3W5 708 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ARFGAP3Q9NP61 516 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 PAPOLBQ9NRJ5 636 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 UBAP1Q9NZ09 502 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 PPARGC1AQ9UBK2 798 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 PCYOX1Q9UHG3 505 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 TMPRSS11EQ9UL52 423 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ENTPD2Q9Y5L3 495 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 RBM47A0AV96 593 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 BUD23O43709 281 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 CNMDO75829 334 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 PRAMEF1O95521 474 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 ZNF37AP17032 561 aaPredicted RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 SERPINB3P29508 390 aa8.27□□□□□ -1.09
HMGB1-203ENST00000341423 RPL22P35268 128 aaKnown RBP8.27□□□□□ -1.09
HMGB1-203ENST00000341423 IL10RBQ08334 325 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms