RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ARSIQ5FYB1 569 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 LILRA6Q6PI73 481 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 KDELC1Q6UW63 502 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 C11orf74Q86VG3 221 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CFAP206Q8IYR0 622 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CPSF7Q8N684 471 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 POU5F2Q8N7G0 328 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 DPEP2Q9H4A9 486 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SLC32A1Q9H598 525 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CARS2Q9HA77 564 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 C8orf4Q9NR00 106 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 EXD2Q9NVH0 621 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TRPC4Q9UBN4 977 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 CLDN4O14493 209 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SERPINB7O75635 380 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SOX30O94993 753 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 KLKB1P03952 638 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 UQCRBP14927 111 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PRDX6P30041 224 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HERVK_113P63132 956 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RPS21P63220 83 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 AGTRAPQ6RW13 159 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF765Q7L2R6 523 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 GPR149Q86SP6 731 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MPP4Q96JB8 637 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 WDR92Q96MX6 357 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RTP3Q9BQQ7 232 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ERVK-6Q9BXR3 956 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 IMPAD1Q9NX62 359 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 FANCGO15287 622 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 DLX3O60479 287 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RPS3P23396 243 aaKnown RBP eCLIP6.76□□□□□ -1.331e-7■■■□□ 16.4
SF3B1-201ENST00000335508 ERVK-8P63133 956 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RIPK1Q13546 671 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SF1Q15637 639 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NEK5Q6P3R8 708 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 AAGABQ6PD74 315 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ZBTB49Q6ZSB9 765 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 KCNV2Q8TDN2 545 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 BTN2A2Q8WVV5 523 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HMGB4Q8WW32 186 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SCAMP4Q969E2 229 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TSSK3Q96PN8 268 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 AGAP2Q99490 1192 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MYOCQ99972 504 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 WRAP53Q9BUR4 548 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ABCG4Q9H172 646 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ADAM7Q9H2U9 754 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 IL36AQ9UHA7 158 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TRPS1Q9UHF7 1281 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RPS6KA6Q9UK32 745 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PCDHGA2Q9Y5H1 932 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 LOC285095A0A1B0GVY8 99 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 A8MT66 165 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 H0YGN5 161 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NUAK1O60285 661 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 IGLV3-25P01717 112 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PRPS1L1P21108 318 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MAGEA10P43363 369 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HSPA7P48741 367 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 STXBP1P61764 594 aaKnown RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SEMA3AQ14563 771 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HERC3Q15034 1050 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MSS51Q4VC12 460 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PPM1JQ5JR12 505 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF621Q6ZSS3 439 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HCAR2Q8TDS4 363 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ABHD8Q96I13 439 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SLC9A8Q9Y2E8 581 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 NFS1Q9Y697 457 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 BCORQ6W2J9 1755 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 COX4I1P13073 169 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ATP1B2P14415 290 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 DPP6P42658 865 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 ARHGAP8P85298 464 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 FRG2Q64ET8 278 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 KIAA1161Q6NSJ0 714 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 DNAJC14Q6Y2X3 702 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 RABEPKQ7Z6M1 372 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 DHDDSQ86SQ9 333 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 LDB1Q86U70 411 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM173Q86WV6 379 aaPredicted RBP6.76□□□□□ -1.33
SF3B1-201ENST00000335508 HID1Q8IV36 788 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 FRG2BQ96QU4 278 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 PANX1Q96RD7 426 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 TBC1D10AQ9BXI6 508 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 SLC40A1Q9NP59 571 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MARK1Q9P0L2 795 aa6.76□□□□□ -1.33
SF3B1-201ENST00000335508 MYH6P13533 1939 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 FFAR3O14843 346 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 GPR42O15529 346 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 HOXC11O43248 304 aaPredicted RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 RASSF9O75901 435 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 CBX6O95503 412 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 PDHA1P08559 390 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ATP6V1C1P21283 382 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 VARSP26640 1264 aaKnown RBP6.75□□□□□ -1.33
SF3B1-201ENST00000335508 SPINT3P49223 89 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 FAM214AQ32MH5 1076 aa6.75□□□□□ -1.33
SF3B1-201ENST00000335508 ANO7Q6IWH7 933 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms