RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CFAP20Q9Y6A4 193 aaKnown RBP15.57■□□□□ 0.08
CCDC28A-201ENST00000332797 FAM149AA5PLN7 773 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 LIN7AO14910 233 aaPredicted RBP15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 EIF3HO15372 352 aaKnown RBP eCLIP15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 RPS3P23396 243 aaKnown RBP eCLIP15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 SLC19A1P41440 591 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 PPM1FP49593 454 aaPredicted RBP15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 MPP1Q00013 466 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 RPE65Q16518 533 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 ZNF789Q5FWF6 425 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 CTSL3PQ5NE16 218 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 ZNF449Q6P9G9 518 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 KRT222Q8N1A0 295 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 GALNT15Q8N3T1 639 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 SPDYE1Q8NFV5 336 aaPredicted RBP15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 PYROXD1Q8WU10 500 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 SEC14L1Q92503 715 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 RMDN2Q96LZ7 410 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 C12orf66Q96MD2 445 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 SLC38A3Q99624 504 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 LRRN3Q9H3W5 708 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 FAM114A2Q9NRY5 505 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 POT1Q9NUX5 634 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 IMP3Q9NV31 184 aaKnown RBP15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 KCNK4Q9NYG8 393 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 KLK13Q9UKR3 277 aa15.56■□□□□ 0.08
CCDC28A-201ENST00000332797 PRAMEF33A0A0G2JMD5 474 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 A0A1W2PQM1 296 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 ZW10O43264 779 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 S1PR4O95977 384 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 MT-CO3P00414 261 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 PDHA2P29803 388 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 GPR3P46089 330 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 CSE1LP55060 971 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 RPA4Q13156 261 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 CBLBQ13191 982 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 SPIDRQ14159 915 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 NR1D2Q14995 579 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 AMZ1Q400G9 498 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 DUS1LQ6P1R4 473 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 TRMT10BQ6PF06 316 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 CAPN12Q6ZSI9 719 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 TMPRSS7Q7RTY8 843 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 TMPRSS12Q86WS5 348 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 MARCH9Q86YJ5 346 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 WDR48Q8TAF3 677 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 GABPB2Q8TAK5 448 aaPredicted RBP15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 SH3KBP1Q96B97 665 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 BIRC8Q96P09 236 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 PANX3Q96QZ0 392 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 GFM1Q96RP9 751 aaKnown RBP15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 INSM2Q96T92 566 aaPredicted RBP15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 SCNM1Q9BWG6 230 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 OR52A5Q9H2C5 316 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 L2HGDHQ9H9P8 463 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 FBXO5Q9UKT4 447 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 WASF3Q9UPY6 502 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 PCDHB1Q9Y5F3 818 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 PIKFYVEQ9Y2I7 2098 aa15.55■□□□□ 0.08
CCDC28A-201ENST00000332797 BHMG1C9JSJ3 638 aaPredicted RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 B4GAT1O43505 415 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 ESR1P03372 595 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 MTHFD1P11586 935 aaKnown RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 JUPP14923 745 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 CCR7P32248 378 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 MAPK9P45984 424 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 CARSP49589 748 aaKnown RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 ADARP55265 1226 aaKnown RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 CDCP2Q5VXM1 449 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 RBM44Q6ZP01 1051 aaKnown RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 PALM2Q8IXS6 379 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 C2CD4AQ8NCU7 369 aaPredicted RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 LRRN4CLQ8ND94 238 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 GSDMBQ8TAX9 411 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 IFT81Q8WYA0 676 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 TMEM159Q96B96 161 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 PHACTR1Q9C0D0 580 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 ZMYND15Q9H091 742 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 ZDHHC18Q9NUE0 388 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 SLC17A6Q9P2U8 582 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 ATXN7L1Q9ULK2 861 aaPredicted RBP15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 CLCA2Q9UQC9 943 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 PTPRBP23467 1997 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 RP1P56715 2156 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 ASXL3Q9C0F0 2248 aa15.54■□□□□ 0.08
CCDC28A-201ENST00000332797 IGHV1OR21-1A0A087WYE8 117 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 SLC5A10A0PJK1 596 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 D6RAR5 112 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 H3BMM5 538 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 IFRD1O00458 451 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 NTN3O00634 580 aaPredicted RBP15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 NIPSNAP2O75323 286 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 TCEA3O75764 348 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 PKMP14618 531 aaKnown RBP15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 HSPA14Q0VDF9 509 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 TMED2Q15363 201 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 MAP9Q49MG5 647 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 NKAIN2Q5VXU1 208 aa15.53■□□□□ 0.08
CCDC28A-201ENST00000332797 CAPRIN2Q6IMN6 1127 aaKnown RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms