RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 XPNPEP2O43895 674 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PPP3CBP16298 524 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 DPEP1P16444 411 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CAP1Q01518 475 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TOB2Q14106 344 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FASTKD3Q14CZ7 662 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ATP13A4Q4VNC1 1196 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SHC4Q6S5L8 630 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 GPSM1Q86YR5 675 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 C7orf61Q8IZ16 206 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 FAM109AQ8N4B1 249 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CPSF7Q8N684 471 aaKnown RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR2T12Q8NG77 320 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OSTF1Q92882 214 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MYRFLQ96LU7 910 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LPIN3Q9BQK8 851 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 HCN2Q9UL51 889 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 JCADQ9P266 1359 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 NEO1Q92859 1461 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 AP2A2O94973 939 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MBP02144 154 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 C9P02748 559 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CYP11A1P05108 521 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 IFI30P13284 250 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CAPN3P20807 821 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 MMP12P39900 470 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 VAMP2P63027 116 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SP4Q02446 784 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SEMA3AQ14563 771 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM132DQ14C87 1099 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LYRM7Q5U5X0 104 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 KCNIP4Q6PIL6 250 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 OR6B3Q8NGW1 331 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PPP1R16AQ96I34 528 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 COL21A1Q96P44 957 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 KATNBL1Q9H079 304 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SEMA4AQ9H3S1 761 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TRPV4Q9HBA0 871 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ATP13A1Q9HD20 1204 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACEP12821 1306 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CMPK1P30085 196 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 WEE1P30291 646 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 CALCRP30988 508 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACTC1P68032 377 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACTA1P68133 377 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ABCA11PQ4W5N1 156 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 DRICH1Q6PGQ1 229 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF227Q86WZ6 799 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 C10orf53Q8N6V4 93 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC37A3Q8NCC5 494 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ACTL9Q8TC94 416 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC29A1Q99808 456 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 LGR4Q9BXB1 951 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 SLC52A2Q9HAB3 445 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM39AQ9NV64 488 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF175Q9Y473 711 aa4.79□□□□□ -1.64
CSMD3-201ENST00000297405 PTPRUQ92729 1446 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 A0A087X0T9 212 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ERVV-1B6SEH8 477 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SCN2BO60939 215 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 OR6A2O95222 327 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 UBBP0CG47 229 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 UBCP0CG48 685 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PDX1P52945 283 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TBX2Q13207 712 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 GRM4Q14833 912 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PEA15Q15121 130 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SEC23BQ15437 767 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MRPL41Q8IXM3 137 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 CHPT1Q8WUD6 406 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ELMOD3Q96FG2 381 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 OR4K3Q96R72 315 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TCEAL2Q9H3H9 227 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MRPS7Q9Y2R9 242 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PMF1-BGLAPU3KQ54 211 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 HTR3BO95264 441 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 LINGO3P0C6S8 592 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 BGNP21810 368 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 DGKAP23743 735 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SERPINF1P36955 418 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC12A3P55017 1021 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PSMA6P60900 246 aaKnown RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 BLOC1S1P78537 153 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 CRADDP78560 199 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 FMR1Q06787 632 aaKnown RBP eCLIP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TIGD2Q4W5G0 525 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ZDHHC20Q5W0Z9 365 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC36A4Q6YBV0 504 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 ITIH5Q86UX2 942 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SLC22A8Q8TCC7 542 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SMAP2Q8WU79 429 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 FATE1Q969F0 183 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 KIAA1143Q96AT1 154 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SERAC1Q96JX3 654 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SEC22CQ9BRL7 303 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 LXNQ9BS40 222 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM117Q9H0C3 514 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 MID1IP1Q9NPA3 183 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 PTPRDP23468 1912 aa4.78□□□□□ -1.64
CSMD3-201ENST00000297405 SPATA31A6Q5VVP1 1343 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms