RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CKBP12277 381 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 ELK4P28324 431 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 OR1D2P34982 312 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 GGT5P36269 586 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 AIF1P55008 147 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 OR2B6P58173 313 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 STARD3Q14849 445 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 DIRAS2Q96HU8 199 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 B3GALT6Q96L58 329 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 COPS4Q9BT78 406 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.17■□□□□ 0.026e-7■■■■□ 21.6
SHH-201ENST00000297261 INTS10Q9NVR2 710 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 SPATA7Q9P0W8 599 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 OR6C75A6NL08 312 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 A8MT66 165 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PTGESO14684 152 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 ITGBL1O95965 494 aaPredicted RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 IFI30P13284 250 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PIGFQ07326 219 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 TAF10Q12962 218 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PPP1R3AQ16821 1122 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 R3HCC1LQ7Z5L2 792 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 ZC3HC1Q86WB0 502 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 TTC29Q8NA56 475 aaPredicted RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 OR8H1Q8NGG4 311 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 C1GALT1C1Q96EU7 318 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PAAF1Q9BRP4 392 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 TTPALQ9BTX7 342 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 DCSTAMPQ9H295 470 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 EIF2B3Q9NR50 452 aaKnown RBP15.17■□□□□ 0.02
SHH-201ENST00000297261 CREBZFQ9NS37 354 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 MIOSQ9NXC5 875 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 GMIPQ9P107 970 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 VPS51Q9UID3 782 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 PRELID1Q9Y255 219 aa15.17■□□□□ 0.02
SHH-201ENST00000297261 FUOMA2VDF0 154 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 NDST2P52849 883 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 CYP2A13Q16696 494 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ZNF544Q6NX49 715 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 PQLC3Q8N755 202 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ZNF420Q8TAQ5 688 aaPredicted RBP15.16■□□□□ 0.02
SHH-201ENST00000297261 GPR21Q99679 349 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 PIGVQ9NUD9 493 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 PRKAB1Q9Y478 270 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 PRR23AA6NEV1 266 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ARVCFO00192 962 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 AURKAO14965 403 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ENO2P09104 434 aaPredicted RBP15.16■□□□□ 0.02
SHH-201ENST00000297261 PRKACGP22612 351 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ATP5C1P36542 298 aaKnown RBP15.16■□□□□ 0.02
SHH-201ENST00000297261 GK3PQ14409 553 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 UBXN11Q5T124 520 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 TMPRSS11AQ6ZMR5 421 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 PTCHD4Q6ZW05 846 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 MLPHQ9BV36 600 aaPredicted RBP15.16■□□□□ 0.02
SHH-201ENST00000297261 ACTR3BQ9P1U1 418 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 HEMK1Q9Y5R4 338 aaPredicted RBP15.16■□□□□ 0.02
SHH-201ENST00000297261 NRP1O14786 923 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 SUV39H1O43463 412 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ANXA5P08758 320 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 RFX3P48380 749 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 LAPTM5Q13571 262 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 USP41Q3LFD5 358 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 BRMS1LQ5PSV4 323 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 NCBP2-AS2Q69YL0 99 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 GPR153Q6NV75 609 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ELMSAN1Q6PJG2 1045 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 ADAMTSL2Q86TH1 951 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 TMEM126BQ8IUX1 230 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 GPR65Q8IYL9 337 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 MAPK15Q8TD08 544 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 SMOQ99835 787 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 SAMD4AQ9UPU9 718 aaKnown RBP15.16■□□□□ 0.02
SHH-201ENST00000297261 SPEF1Q9Y4P9 236 aa15.16■□□□□ 0.02
SHH-201ENST00000297261 A0A1W2PQ72 361 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 TLR5O60602 858 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 TYMPP19971 482 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ATP12AP54707 1039 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 RAB6CQ53S08 254 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ZNF773Q6PK81 442 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 TXNDC11Q6PKC3 985 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 FIBCD1Q8N539 461 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 PHC3Q8NDX5 983 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 OR10Q1Q8NGQ4 319 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 KBTBD7Q8WVZ9 684 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 GAB3Q8WWW8 586 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 STON2Q8WXE9 905 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 LRRC3Q9BY71 257 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 YTHDF1Q9BYJ9 559 aaKnown RBP15.15■□□□□ 0.02
SHH-201ENST00000297261 RAB6CQ9H0N0 254 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ASB8Q9H765 288 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 DNAJB9Q9UBS3 223 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 DHRS4L1P0CG22 281 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 VBP1P61758 197 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 FAM174BQ3ZCQ3 159 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 FUT10Q6P4F1 479 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ZDHHC21Q8IVQ6 265 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 IRGQQ8WZA9 623 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 ZNF558Q96NG5 402 aa15.15■□□□□ 0.02
SHH-201ENST00000297261 PEX16Q9Y5Y5 336 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms