RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MAP2P11137 1827 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 C13orf42A0A1B0GVH6 325 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 TBL1XO60907 577 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 GNAZP19086 355 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 KDELR1P24390 212 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 AZGP1P25311 298 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 SLC7A1P30825 629 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 FBXO43Q4G163 708 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 C7orf50Q9BRJ6 194 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 MYNNQ9NPC7 610 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 SEC14L4Q9UDX3 406 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 VAMP1P23763 118 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 PTPN6P29350 595 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 PSEN2P49810 448 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.77□□□□□ -0.23e-6■■□□□ 11.4
CCDC88A-201ENST00000263630 SLC2A14Q8TDB8 520 aa13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF70Q9UC06 446 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-201ENST00000263630 ZNF16P17020 682 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 ACADVLP49748 655 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 SGCBQ16585 318 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 COX18Q8N8Q8 333 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 S100A16Q96FQ6 103 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 COPS8Q99627 209 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 A0A1W2PQ67 120 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 SNX3O60493 162 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 VIPP01282 170 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 AHCYP23526 432 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 LUMP51884 338 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 HERVK_113P62684 666 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 ABRAXAS2Q15018 415 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF366Q8N895 744 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 CRAMP1Q96RY5 1269 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 IFT27Q9BW83 186 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 UGT2B10P36537 528 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 C2orf80Q0P641 193 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 GIT2Q14161 759 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 ATAD3CQ5T2N8 411 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 CAMK1GQ96NX5 476 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 ZMPSTE24O75844 475 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 FGL1Q08830 312 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 USP4Q13107 963 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF676Q8N7Q3 588 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 IRF2BPLQ9H1B7 796 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 KCTD5Q9NXV2 234 aa13.77□□□□□ -0.21
CCDC88A-201ENST00000263630 NOTOA8MTQ0 251 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 CELF2O95319 508 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 C9orf43Q8TAL5 461 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ALG2Q9H553 416 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 KAT8Q9H7Z6 458 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 CRTAC1Q9NQ79 661 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 PHPT1Q9NRX4 125 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 NR2E1Q9Y466 385 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 TEX13DA0A0J9YY54 714 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 FBP2O00757 339 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 BDNFP23560 247 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ABL2P42684 1182 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF517Q6ZMY9 492 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 FAM84BQ96KN1 310 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 PBDC1Q9BVG4 233 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 EIF5A2Q9GZV4 153 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ERVK-18Q9QC07 812 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 CAMSAP1Q5T5Y3 1602 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 SIGLEC16A6NMB1 481 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ZNF286BP0CG31 522 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ALPPL2P10696 532 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 RBL1P28749 1068 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 SREBF1P36956 1147 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 A0A1W2PRQ8 180 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 PRKD1Q15139 912 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 GRIK4Q16099 956 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 OR5T2Q8NGG2 359 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 OSMRQ99650 979 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 OR51V1Q9H2C8 321 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 PARPBPQ9NWS1 579 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 MIOSQ9NXC5 875 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 SH3PXD2BA1X283 911 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 SLC34A2O95436 690 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 AGR2O95994 175 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 TAS1R2Q8TE23 839 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 TCEAL4Q96EI5 215 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 S100A14Q9HCY8 104 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 PRORSD1PA6NEY8 169 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 H7C417 338 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 IFNA5P01569 189 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 NFE2L1Q14494 772 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 DEFB106AQ8N104 65 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ABHD5Q8WTS1 349 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 UBQLN2Q9UHD9 624 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 TVP23AA6NH52 213 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 USP12O75317 370 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 COL28A1Q2UY09 1125 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 MRPL41Q8IXM3 137 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 RANBP3Q9H6Z4 567 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 MKKSQ9NPJ1 570 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 AQP1P29972 269 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 IQCCQ4KMZ1 466 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 C4orf19Q8IY42 314 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 ASB15Q8WXK1 588 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 GHRLQ9UBU3 117 aa13.76□□□□□ -0.21
CCDC88A-201ENST00000263630 NFASCO94856 1347 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms