RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 METRNLQ641Q3 311 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 CCDC70Q6NSX1 233 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 PWWP2BQ6NUJ5 590 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 IRGCQ6NXR0 463 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 CYB5D1Q6P9G0 228 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 FAM151BQ6UXP7 276 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 SPOCD1Q6ZMY3 1216 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 ZNF517Q6ZMY9 492 aaPredicted RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 BZW1Q7L1Q6 419 aaKnown RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 TMEM135Q86UB9 458 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 AMZ2Q86W34 360 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 KMT5CQ86Y97 462 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 RASGRP3Q8IV61 690 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 APLFQ8IW19 511 aaPredicted RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 D2HGDHQ8N465 521 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 TFB1MQ8WVM0 346 aaKnown RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 CD180Q99467 661 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 VAT1Q99536 393 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 MAK16Q9BXY0 300 aaKnown RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 ZCCHC2Q9C0B9 1178 aaKnown RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 DEF6Q9H4E7 631 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 ZFAND3Q9H8U3 227 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 NHEJ1Q9H9Q4 299 aaPredicted RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 UGT1A7Q9HAW7 530 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 UGT1A10Q9HAW8 530 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 UGT1A8Q9HAW9 530 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 LHX9Q9NQ69 397 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS50-201ENST00000251739 PADI1Q9ULC6 663 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 DNMT3AQ9Y6K1 912 aaPredicted RBP10.08□□□□□ -0.8
VPS50-201ENST00000251739 PCSK5Q92824 1860 aa10.08□□□□□ -0.8
VPS50-201ENST00000251739 CCDC88CQ9P219 2028 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 GLYATL1P3A0A0U1RQE8 302 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 OR5K3A6NET4 321 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 AGAP14A8MT82 685 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 MKRN2OSH3BPM6 223 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 ST8SIA5O15466 376 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 RFPL1O75677 317 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 MT-ND3P03897 115 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 PDGFAP04085 211 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 MTHFD1P11586 935 aaKnown RBP10.07□□□□□ -0.8
VPS50-201ENST00000251739 MPP3Q13368 585 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 MSLNQ13421 630 aaPredicted RBP10.07□□□□□ -0.8
VPS50-201ENST00000251739 ITGA9Q13797 1035 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 SEPT6Q14141 434 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 ERV3-1Q14264 604 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 KCNAB1Q14722 419 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 TFDP3Q5H9I0 405 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 CERS6Q6ZMG9 384 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 GLT6D1Q7Z4J2 308 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 KATNAL2Q8IYT4 538 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 CARFQ8N187 725 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 GDAP1Q8TB36 358 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 ELMO2Q96JJ3 720 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 ZNF514Q96K75 400 aaPredicted RBP10.07□□□□□ -0.8
VPS50-201ENST00000251739 CCDC42Q96M95 316 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 RUFY1Q96T51 708 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 MAP3K3Q99759 626 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 GOLPH3Q9H4A6 298 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 ACTL8Q9H568 366 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 AKIRIN1Q9H9L7 192 aaPredicted RBP10.07□□□□□ -0.8
VPS50-201ENST00000251739 PDE7BQ9NP56 450 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 ZNHIT6Q9NWK9 470 aaKnown RBP10.07□□□□□ -0.8
VPS50-201ENST00000251739 TRIM10Q9UDY6 481 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 RARRES3Q9UL19 164 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 PSMD13Q9UNM6 376 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 PLAAQ9Y263 795 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 BTRCQ9Y297 605 aa10.07□□□□□ -0.8
VPS50-201ENST00000251739 NUP210LQ5VU65 1888 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 MGAT4DA6NG13 374 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 OR2AG2A6NM03 316 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 CBFA2T2O43439 604 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 BUD23O43709 281 aaKnown RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 SPOPO43791 374 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 EBLN1P0CF75 366 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 ADRA1AP35348 466 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 TBX2Q13207 712 aaPredicted RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 SEMA5AQ13591 1074 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 PTPRCAPQ14761 206 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 PPP2R5EQ16537 467 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 ZNF658BQ4V348 819 aaPredicted RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 BCL7AQ4VC05 210 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 DUS1LQ6P1R4 473 aaKnown RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 KLHL35Q6PF15 583 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 TMEM220Q6QAJ8 160 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 BBS12Q6ZW61 710 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 ZC3H18Q86VM9 953 aaKnown RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 SLC25A41Q8N5S1 370 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 SIDT2Q8NBJ9 832 aaKnown RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 IPMKQ8NFU5 416 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 BLOC1S5Q8TDH9 187 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 ZFPM2Q8WW38 1151 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 ZNF501Q96CX3 271 aaPredicted RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 LINC00615Q96LM1 132 aaPredicted RBP10.06□□□□□ -0.8
VPS50-201ENST00000251739 RMDN2Q96LZ7 410 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 TTC25Q96NG3 672 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 GPR87Q9BY21 358 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 TRIM55Q9BYV6 548 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 TWSG1Q9GZX9 223 aa10.06□□□□□ -0.8
VPS50-201ENST00000251739 GBA3Q9H227 469 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms