RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SCNN1DP51172 638 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 IRAK1P51617 712 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 C6orf132Q5T0Z8 1188 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 FAM182AQ5T1J6 154 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DENND1BQ6P3S1 775 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GPD1LQ8N335 351 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GJC3Q8NFK1 279 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 OR6Y1Q8NGX8 325 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 STOML3Q8TAV4 291 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 MAELQ96JY0 434 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DHRS1Q96LJ7 313 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 DMRTB1Q96MA1 342 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RNF26Q9BY78 433 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 GDF3Q9NR23 364 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 WWOXQ9NZC7 414 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 NDRG4Q9ULP0 352 aaKnown RBP2.76□□□□□ -1.97
SCN1A-219ENST00000641575 RAB26Q9ULW5 256 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 COL15A1P39059 1388 aa2.76□□□□□ -1.97
SCN1A-219ENST00000641575 A0A087WUU8 490 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IRGMA1A4Y4 181 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OR5K4A6NMS3 321 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SLC30A4O14863 429 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PRICKLE3O43900 615 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GNAO1P09471 354 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DDCP20711 480 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RPL4P36578 427 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ACADVLP49748 655 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ARSEP51690 589 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PPP3R1P63098 170 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DPCR1Q3MIW9 517 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GXYLT1Q4G148 440 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ATAD3CQ5T2N8 411 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PHF19Q5T6S3 580 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF613Q6PF04 617 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RBM44Q6ZP01 1051 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CHSY3Q70JA7 882 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SLC9B2Q86UD5 537 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DNAAF5Q86Y56 855 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF454Q8N9F8 522 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C1orf216Q8TAB5 229 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BRSK1Q8TDC3 778 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF514Q96K75 400 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 Q96MT0 163 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 WDR24Q96S15 920 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DDX31Q9H8H2 851 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FAM118AQ9NWS6 357 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TAF6LQ9Y6J9 622 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HTR3EA5X5Y0 456 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KLHL33A6NCF5 533 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PPEF2O14830 753 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DHFRP00374 187 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ORM1P02763 201 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MAPK10P53779 464 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RAB5BP61020 215 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MYBPC3Q14896 1274 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RPE65Q16518 533 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C10orf62Q5T681 223 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PIK3R6Q5UE93 754 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 AGAP7PQ5VUJ5 663 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 AGAP6Q5VW22 663 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C3orf33Q6P1S2 294 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF605Q86T29 641 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SLITRK4Q8IW52 837 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TIGD4Q8IY51 512 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MIER2Q8N344 545 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MEIOBQ8N635 442 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TEX47Q8TBZ9 253 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HM13Q8TCT9 377 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ADIPOR1Q96A54 375 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 AGAP4Q96P64 663 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CHP1Q99653 195 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KCNJ15Q99712 375 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SEMA4AQ9H3S1 761 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DPEP2Q9H4A9 486 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ABCB9Q9NP78 766 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PHPT1Q9NRX4 125 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DDX20Q9UHI6 824 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 LEF1Q9UJU2 399 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ALG5Q9Y673 324 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MED23Q9ULK4 1368 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GNG14A0A1W2PPG7 69 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SH3PXD2BA1X283 911 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BCLAF3A2AJT9 711 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OR5K3A6NET4 321 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TPST1O60507 370 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KAT7O95251 611 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CDK1P06493 297 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2C9P11712 490 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 IL1R1P14778 569 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 GCGRP47871 477 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 DNASE1L1P49184 302 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 XIAPP98170 497 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RIN1Q13671 783 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 BATFQ16520 125 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 C6orf141Q5SZD1 244 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EGFLAMQ63HQ2 1017 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 RGMBQ6NW40 437 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SYVN1Q86TM6 617 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OAFQ86UD1 273 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 KBTBD6Q86V97 674 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms