RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 C12orf40Q86WS4 652 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PRSS58Q8IYP2 241 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 CFAP52Q8N1V2 620 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZCCHC9Q8N567 271 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZBTB2Q8N680 514 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF398Q8TD17 642 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 HDAC10Q969S8 669 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 ERMAPQ96PL5 475 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 GPATCH1Q9BRR8 931 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 PORCNQ9H237 461 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 METTL7AQ9H8H3 244 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 LRTM1Q9HBL6 345 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 SERTAD3Q9UJW9 196 aa5.5□□□□□ -1.53
SCN1A-209ENST00000635750 HEMK1Q9Y5R4 338 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 AFDNP55196 1824 aaKnown RBP5.5□□□□□ -1.53
SCN1A-209ENST00000635750 DHRS12A0PJE2 317 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 A6NCN8 305 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 TBX1O43435 398 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ITGA2BP08514 1039 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 FAM86B2P0C5J1 330 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 CACNG1Q06432 222 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 SLC20A2Q08357 652 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PLET1Q6UQ28 207 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 FAM183BPQ6ZVS7 135 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ANKS1BQ7Z6G8 1248 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 SLC44A3Q8N4M1 653 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PCDH20Q8N6Y1 951 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 HM13Q8TCT9 377 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 GPR151Q8TDV0 419 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 UPF1Q92900 1129 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 RBM4BQ9BQ04 359 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 C11orf84Q9BUA3 381 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 RBM4Q9BWF3 364 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 HHATLQ9HCP6 504 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PLEKHA6Q9Y2H5 1048 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PTCH2Q9Y6C5 1203 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 WASF2Q9Y6W5 498 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 AZIN1O14977 448 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 STBD1O95210 358 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 AGR2O95994 175 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 UGT1A1P22309 533 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 MTHFRP42898 656 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 MAGEA12P43365 314 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 SOX10P56693 466 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 C1QTNF8P60827 252 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 CAP1Q01518 475 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 GHRHRQ02643 423 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 TOR1AIP1Q5JTV8 583 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 UBXN11Q5T124 520 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 UBAP2Q5T6F2 1119 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF627Q7L945 461 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PIWIL4Q7Z3Z4 852 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 NET1Q7Z628 596 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZC3HC1Q86WB0 502 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 DNAAF5Q86Y56 855 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 SFRP1Q8N474 314 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 OR52K2Q8NGK3 314 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 STYXQ8WUJ0 223 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 LPPQ93052 612 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZBED6CLQ96FA7 236 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 GPR88Q9GZN0 384 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 POLLQ9UGP5 575 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 RUVBL1Q9Y265 456 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 MED14O60244 1454 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 COL1A2P08123 1366 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 NPEPPSL1A6NEC2 478 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 C5orf60A6NFR6 353 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 BBIP1A8MTZ0 92 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 SCGB1D2O95969 90 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ITPKAP23677 461 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 NDUFS1P28331 727 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 MSX1P28360 303 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 DUSP3P51452 185 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF143P52747 638 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 GBX2P52951 348 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 LSM3P62310 102 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 NFKB2Q00653 900 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 GALK2Q01415 458 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PRKCDQ05655 676 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 FAAP100Q0VG06 881 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 RAB30Q15771 203 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 TMEM35AQ53FP2 167 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 PPP1R26Q5T8A7 1209 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 RNASEH2BQ5TBB1 312 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 EIF5AL1Q6IS14 154 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZCCHC23Q6ZST2 131 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 OR10H4Q8NGA5 316 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 HMGB4Q8WW32 186 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ATXN2LQ8WWM7 1075 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZC3H10Q96K80 434 aaKnown RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 NECAB3Q96P71 396 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-209ENST00000635750 DNAJC5Q9H3Z4 198 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 SEC61A2Q9H9S3 476 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 OSGEPQ9NPF4 335 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 TAS2R7Q9NYW3 318 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 MAU2Q9Y6X3 613 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 ZNF609O15014 1411 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 NTSR2O95665 410 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 UGT2B4P06133 528 aa5.49□□□□□ -1.53
SCN1A-209ENST00000635750 MAT2AP31153 395 aaKnown RBP5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms