RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TARDBPQ13148 414 aaKnown RBP eCLIP17.77■□□□□ 0.44
CLN3-239ENST00000628023 SEMA3AQ14563 771 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 CRYMQ14894 314 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 SPANXN3Q5MJ09 141 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 NEPROQ6NW34 567 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 GUSBP11Q6P575 273 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 C11orf96Q7Z7L8 435 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 CCNJLQ8IV13 435 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 CLDN19Q8N6F1 224 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 IFI44Q8TCB0 444 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 LRRC39Q96DD0 335 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 NRSN2Q9GZP1 204 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 TBC1D29Q9UFV1 150 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 U3KQA8 63 aa17.77■□□□□ 0.44
CLN3-239ENST00000628023 ZCWPW2A0A1B0GU75 182 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 UBA6A0AVT1 1052 aaPredicted RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 MGAT4DA6NG13 374 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 TP73O15350 636 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 NOBOXO60393 691 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 OR1I1O60431 355 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 OR56A5P0C7T3 313 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 DEKP35659 375 aaKnown RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 ARCN1P48444 511 aaKnown RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 CLCNKAP51800 687 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 GLE1Q53GS7 698 aaKnown RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 RNF187Q5TA31 235 aaPredicted RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 ZNF470Q6ECI4 717 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 OGFOD3Q6PK18 319 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 LRRC69Q6ZNQ3 347 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 KCNMB4Q86W47 210 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 ANKMY2Q8IV38 441 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 SFTPA2Q8IWL1 248 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 ZBED8Q8IZ13 594 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 CACTIN-AS1Q8N1I8 211 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 GPR156Q8NFN8 814 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 OR6C4Q8NGE1 309 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 GABPB2Q8TAK5 448 aaPredicted RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 MAPK15Q8TD08 544 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 PATE1Q8WXA2 126 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 DCBLD2Q96PD2 775 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 TSSK1BQ9BXA7 367 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 STN1Q9H668 368 aaKnown RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 PRDM8Q9NQV8 689 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 PRSS21Q9Y6M0 314 aa17.76■□□□□ 0.43
CLN3-239ENST00000628023 ZFC3H1O60293 1989 aaKnown RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 ARHGEF17Q96PE2 2063 aaPredicted RBP17.76■□□□□ 0.43
CLN3-239ENST00000628023 TRBV23OR9-2A0A075B6M9 112 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 KLHL33A6NCF5 533 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 EIF4E1BA6NMX2 242 aaKnown RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 PRMT5O14744 637 aaPredicted RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 RRP8O43159 456 aaKnown RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 SGTAO43765 313 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 FTH1P02794 183 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 F3P13726 295 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 OGNP20774 298 aaKnown RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 RPL10P27635 214 aaKnown RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 HALP42357 657 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 ABCG1P45844 678 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 CLDN6P56747 220 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 DMPKQ09013 629 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 NFE2L1Q14494 772 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 RTP5Q14D33 572 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 CCDC25Q86WR0 208 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 IGDCC3Q8IVU1 814 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 TRIM48Q8IWZ4 208 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 NAGSQ8N159 534 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 OR2L2Q8NH16 312 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 HM13Q8TCT9 377 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 CALML6Q8TD86 181 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 SLC37A2Q8TED4 501 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 ART4Q93070 314 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 CCDC74AQ96AQ1 378 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 LINC00615Q96LM1 132 aaPredicted RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 CCM2Q9BSQ5 444 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 FAM167BQ9BTA0 163 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 SYNDIG1Q9H7V2 258 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 EPB41L5Q9HCM4 733 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 SAYSD1Q9NPB0 183 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 PPANQ9NQ55 473 aaKnown RBP17.75■□□□□ 0.43
CLN3-239ENST00000628023 FAM114A2Q9NRY5 505 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 CLCA2Q9UQC9 943 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 VPS9D1Q9Y2B5 631 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 TEX264Q9Y6I9 313 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 FAM169AQ9Y6X4 670 aa17.75■□□□□ 0.43
CLN3-239ENST00000628023 EME2A4GXA9 379 aaPredicted RBP17.74■□□□□ 0.43
CLN3-239ENST00000628023 RHPN2P1A8MT19 583 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 EIF3HO15372 352 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLN3-239ENST00000628023 EML2O95834 649 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 DRG2P55039 364 aaKnown RBP17.74■□□□□ 0.43
CLN3-239ENST00000628023 EIF3BP55884 814 aaKnown RBP17.74■□□□□ 0.43
CLN3-239ENST00000628023 HLTFQ14527 1009 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLN3-239ENST00000628023 TRADDQ15628 312 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 PTRHD1Q6GMV3 140 aaKnown RBP17.74■□□□□ 0.43
CLN3-239ENST00000628023 ZNF449Q6P9G9 518 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 CFAP206Q8IYR0 622 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 ARL14Q8N4G2 192 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 FBXO36Q8NEA4 188 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 GPR150Q8NGU9 434 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 FBXO25Q8TCJ0 367 aa17.74■□□□□ 0.43
CLN3-239ENST00000628023 PYROXD1Q8WU10 500 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms