RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ZNF513Q8N8E2 541 aaPredicted RBP9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 ANKS4BQ8N8V4 417 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 CCDC197Q8NCU1 140 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 DEFB124Q8NES8 71 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 KCNJ9Q92806 393 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 GATA6Q92908 595 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 THOC1Q96FV9 657 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 SORT1Q99523 831 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 MRPL57Q9BQC6 102 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 SCNM1Q9BWG6 230 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 CLPBQ9H078 707 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 MRPL46Q9H2W6 279 aaKnown RBP9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 KCNK13Q9HB14 408 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 SYTL2Q9HCH5 934 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 CD248Q9HCU0 757 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 ACSS2Q9NR19 701 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 RAD18Q9NS91 495 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 OXSMQ9NWU1 459 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 NFKBIL1Q9UBC1 381 aaPredicted RBP9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 PILRBQ9UKJ0 227 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 MSRB2Q9Y3D2 182 aa9.38□□□□□ -0.91
PDLIM5-223ENST00000627587 PLXND1Q9Y4D7 1925 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM221BA6H8Z2 402 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 NEMP2A6NFY4 417 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 FADS2P1A8MWK0 482 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 SYPP08247 313 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 RBP1P09455 135 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ELFN1P0C7U0 828 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ADRB3P13945 408 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 RPS3P23396 243 aaKnown RBP eCLIP9.37□□□□□ -0.911e-8■■■■□ 20.5
PDLIM5-223ENST00000627587 GRK2P25098 689 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 DRD3P35462 400 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 DCDC1P59894 354 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ELP6Q0PNE2 266 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 STX3Q13277 289 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 CAMK2GQ13555 558 aaPredicted RBP9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ACAP2Q15057 778 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 OR4D1Q15615 310 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 KHDC1Q4VXA5 237 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM46CQ5VWP2 391 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 UGT3A1Q6NUS8 523 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 AADATQ8N5Z0 425 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 SIDT2Q8NBJ9 832 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 RFWD2Q8NHY2 731 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 C10orf82Q8WW14 230 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 FUBP1Q96AE4 644 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ULK4Q96C45 1275 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 RMDN2Q96LZ7 410 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 COQ10AQ96MF6 247 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 C7orf26Q96N11 449 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ZMYND15Q9H091 742 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 CDH19Q9H159 772 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 ABCG8Q9H221 673 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 TRMT6Q9UJA5 497 aaKnown RBP9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 GNPTGQ9UJJ9 305 aa9.37□□□□□ -0.91
PDLIM5-223ENST00000627587 TCRBV21S2A2A0A5A6 115 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RGSL1A5PLK6 1076 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 PSMD11O00231 422 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SGTAO43765 313 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 TRIM13O60858 407 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RNASEH1O60930 286 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ADAM23O75077 832 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 H2AFYO75367 372 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SOD1P00441 154 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SERPINE1P05121 402 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 TROVE2P10155 538 aaKnown RBP eCLIP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RALBP11234 206 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 MTHFD2P13995 350 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 CHRM3P20309 590 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 NTSR1P30989 418 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SKIV2L2P42285 1042 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 CCR10P46092 362 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 EMP3P54852 163 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 TAS2R38P59533 333 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SLC14A1Q13336 389 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ITIH4Q14624 930 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 ZNF423Q2M1K9 1284 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 PIP5KL1Q5T9C9 394 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 PTRHD1Q6GMV3 140 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 KIAA1211LQ6NV74 962 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SPATS2Q86XZ4 545 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 HMGB4Q8WW32 186 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RLN3Q8WXF3 142 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SGF29Q96ES7 293 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 GATA5Q9BWX5 397 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SPATA16Q9BXB7 569 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 RSPH9Q9H1X1 276 aaPredicted RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 FAM83DQ9H4H8 585 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 THAP1Q9NVV9 213 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SMOXQ9NWM0 555 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SERGEFQ9UGK8 458 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 COQ6Q9Y2Z9 468 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 CEP295Q9C0D2 2601 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 NEMP1O14524 444 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 SYNCRIPO60506 623 aaKnown RBP9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 TFEBP19484 476 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 NSG1P42857 185 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 PSMD8P48556 350 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 LIG3P49916 1009 aa9.36□□□□□ -0.91
PDLIM5-223ENST00000627587 COPAP53621 1224 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms