RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 PRKACBP22694 351 aa8.81□□□□□ -1
VCL-206ENST00000623461 KCNJ11Q14654 390 aa8.81□□□□□ -1
VCL-206ENST00000623461 STYK1Q6J9G0 422 aa8.81□□□□□ -1
VCL-206ENST00000623461 DCLRE1AQ6PJP8 1040 aa8.81□□□□□ -1
VCL-206ENST00000623461 KLHL24Q6TFL4 600 aa8.81□□□□□ -1
VCL-206ENST00000623461 AMIGO1Q86WK6 493 aa8.81□□□□□ -1
VCL-206ENST00000623461 RBFAQ8N0V3 343 aa8.81□□□□□ -1
VCL-206ENST00000623461 REPS2Q8NFH8 660 aa8.81□□□□□ -1
VCL-206ENST00000623461 S100A13Q99584 98 aa8.81□□□□□ -1
VCL-206ENST00000623461 CAPN10Q9HC96 672 aa8.81□□□□□ -1
VCL-206ENST00000623461 RABL2BQ9UNT1 228 aa8.81□□□□□ -1
VCL-206ENST00000623461 TIMM22Q9Y584 194 aa8.81□□□□□ -1
VCL-206ENST00000623461 PDCD5O14737 125 aa8.8□□□□□ -1
VCL-206ENST00000623461 MFSD11O43934 449 aa8.8□□□□□ -1
VCL-206ENST00000623461 SERPINA3P01011 423 aa8.8□□□□□ -1
VCL-206ENST00000623461 MTHFD1P11586 935 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 PRKCHP24723 683 aa8.8□□□□□ -1
VCL-206ENST00000623461 RBM34P42696 430 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 PPP5CP53041 499 aa8.8□□□□□ -1
VCL-206ENST00000623461 HUNKP57058 714 aa8.8□□□□□ -1
VCL-206ENST00000623461 NRG1Q02297 640 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 ATP6AP1Q15904 470 aa8.8□□□□□ -1
VCL-206ENST00000623461 CPSF6Q16630 551 aaKnown RBP eCLIP8.8□□□□□ -1
VCL-206ENST00000623461 CXorf57Q6NSI4 855 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 TRMT10BQ6PF06 316 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 USP45Q70EL2 814 aa8.8□□□□□ -1
VCL-206ENST00000623461 SYVN1Q86TM6 617 aa8.8□□□□□ -1
VCL-206ENST00000623461 KIF18BQ86Y91 864 aa8.8□□□□□ -1
VCL-206ENST00000623461 PHTF2Q8N3S3 785 aa8.8□□□□□ -1
VCL-206ENST00000623461 FBXL20Q96IG2 436 aa8.8□□□□□ -1
VCL-206ENST00000623461 FCRL4Q96PJ5 515 aa8.8□□□□□ -1
VCL-206ENST00000623461 TMEM209Q96SK2 561 aa8.8□□□□□ -1
VCL-206ENST00000623461 MGME1Q9BQP7 344 aa8.8□□□□□ -1
VCL-206ENST00000623461 YIPF2Q9BWQ6 316 aa8.8□□□□□ -1
VCL-206ENST00000623461 TMEM39BQ9GZU3 492 aa8.8□□□□□ -1
VCL-206ENST00000623461 SPON1Q9HCB6 807 aa8.8□□□□□ -1
VCL-206ENST00000623461 DDTLA6NHG4 134 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 SLC28A2O43868 658 aa8.8□□□□□ -1
VCL-206ENST00000623461 LRATO95237 230 aa8.8□□□□□ -1
VCL-206ENST00000623461 APOC1P02654 83 aa8.8□□□□□ -1
VCL-206ENST00000623461 MBL2P11226 248 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 GLUD2P49448 558 aa8.8□□□□□ -1
VCL-206ENST00000623461 ARHGDIBP52566 201 aa8.8□□□□□ -1
VCL-206ENST00000623461 SYT16Q17RD7 645 aa8.8□□□□□ -1
VCL-206ENST00000623461 LGI2Q8N0V4 545 aa8.8□□□□□ -1
VCL-206ENST00000623461 STYXQ8WUJ0 223 aa8.8□□□□□ -1
VCL-206ENST00000623461 DERAQ9Y315 318 aa8.8□□□□□ -1
VCL-206ENST00000623461 COQ4Q9Y3A0 265 aa8.8□□□□□ -1
VCL-206ENST00000623461 C10orf71Q711Q0 1435 aa8.8□□□□□ -1
VCL-206ENST00000623461 TP73O15350 636 aa8.8□□□□□ -1
VCL-206ENST00000623461 CTSHP09668 335 aa8.8□□□□□ -1
VCL-206ENST00000623461 BACE1P56817 501 aa8.8□□□□□ -1
VCL-206ENST00000623461 POLR2LP62875 67 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 GBE1Q04446 702 aa8.8□□□□□ -1
VCL-206ENST00000623461 BEND5Q7L4P6 421 aa8.8□□□□□ -1
VCL-206ENST00000623461 PIGZQ86VD9 579 aa8.8□□□□□ -1
VCL-206ENST00000623461 PLCZ1Q86YW0 608 aa8.8□□□□□ -1
VCL-206ENST00000623461 PPP1R14AQ96A00 147 aa8.8□□□□□ -1
VCL-206ENST00000623461 AGRPO00253 132 aa8.8□□□□□ -1
VCL-206ENST00000623461 PRKAR2AP13861 404 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 TMEM132BQ14DG7 1078 aa8.8□□□□□ -1
VCL-206ENST00000623461 PAMR1Q6UXH9 720 aa8.8□□□□□ -1
VCL-206ENST00000623461 TRMT11Q7Z4G4 463 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 CHERPQ8IWX8 916 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 CLIP4Q8N3C7 705 aa8.8□□□□□ -1
VCL-206ENST00000623461 HJURPQ8NCD3 748 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 TBATAQ96M53 351 aa8.8□□□□□ -1
VCL-206ENST00000623461 ZNF641Q96N77 438 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 RABL2AQ9UBK7 228 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 PCDHGB3Q9Y5G1 929 aa8.8□□□□□ -1
VCL-206ENST00000623461 NUAK1O60285 661 aa8.8□□□□□ -1
VCL-206ENST00000623461 MAFO75444 373 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 CHRNA1P02708 482 aa8.8□□□□□ -1
VCL-206ENST00000623461 PKMP14618 531 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 MYF6P23409 242 aa8.8□□□□□ -1
VCL-206ENST00000623461 HERVK_113P63132 956 aa8.8□□□□□ -1
VCL-206ENST00000623461 RNASE12Q5GAN4 147 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 FAM35AQ86V20 835 aa8.8□□□□□ -1
VCL-206ENST00000623461 TREML1Q86YW5 311 aa8.8□□□□□ -1
VCL-206ENST00000623461 ZNF567Q8N184 647 aa8.8□□□□□ -1
VCL-206ENST00000623461 SNIP1Q8TAD8 396 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 TSPEARQ8WU66 669 aa8.8□□□□□ -1
VCL-206ENST00000623461 LRRN4Q8WUT4 740 aa8.8□□□□□ -1
VCL-206ENST00000623461 CCDC107Q8WV48 283 aa8.8□□□□□ -1
VCL-206ENST00000623461 JPH3Q8WXH2 748 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 ZNF486Q96H40 463 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 TCF25Q9BQ70 676 aa8.8□□□□□ -1
VCL-206ENST00000623461 HERC2P3Q9BVR0 1158 aa8.8□□□□□ -1
VCL-206ENST00000623461 ERVK-6Q9BXR3 956 aa8.8□□□□□ -1
VCL-206ENST00000623461 EBF1Q9UH73 591 aa8.8□□□□□ -1
VCL-206ENST00000623461 B4GALT4O60513 344 aa8.8□□□□□ -1
VCL-206ENST00000623461 AMHP03971 560 aa8.8□□□□□ -1
VCL-206ENST00000623461 CDH5P33151 784 aaPredicted RBP8.8□□□□□ -1
VCL-206ENST00000623461 SRSF11Q05519 484 aaKnown RBP8.8□□□□□ -1
VCL-206ENST00000623461 ACOX1Q15067 660 aa8.8□□□□□ -1
VCL-206ENST00000623461 DPY19L1Q2PZI1 675 aa8.8□□□□□ -1
VCL-206ENST00000623461 TAPT1Q6NXT6 567 aa8.8□□□□□ -1
VCL-206ENST00000623461 LRRC52Q8N7C0 313 aa8.8□□□□□ -1
VCL-206ENST00000623461 MIPEPQ99797 713 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms