RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ANAPC7Q9UJX3 599 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SLC5A6Q9Y289 635 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 DNAJC16Q9Y2G8 782 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 SEC16AO15027 2179 aa6.16□□□□□ -1.42
CUX1-220ENST00000607092 FBN2P35556 2912 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 CNTRLQ7Z7A1 2325 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 NF1P21359 2839 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 HEATR9A2RTY3 570 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 OR5K3A6NET4 321 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 WIPF3A6NGB9 483 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 OR52A4PA6NMU1 304 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 TCP11X1B4DZS4 312 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 MEN1O00255 615 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 DDX3XO00571 662 aaKnown RBP eCLIP6.15□□□□□ -1.421e-8■■□□□ 13.3
CUX1-220ENST00000607092 KIF1CO43896 1103 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 MFSD11O43934 449 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 KDM1AO60341 852 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 NDST3O95803 873 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 EPOP01588 193 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 HLA-DQB2P05538 268 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 FURINP09958 794 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 SLC35G4P0C7Q5 338 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 RALBP11234 206 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 CYP2A7P20853 494 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 ELAVL4P26378 380 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 RPL10P27635 214 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 HMGCLP35914 325 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 TPM4P67936 248 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 SLC25A11Q02978 314 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 TMEM115Q12893 351 aaPredicted RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 DPYSL3Q14195 570 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 KRT33BQ14525 404 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 SEPT7Q16181 437 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 IRAK1BP1Q5VVH5 260 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 NCBP2-AS2Q69YL0 99 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 ZNF517Q6ZMY9 492 aaPredicted RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 RBM43Q6ZSC3 357 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 RFLNAQ6ZTI6 216 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 ZNF571Q7Z3V5 609 aaPredicted RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 NT5DC3Q86UY8 548 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 LAPTM4BQ86VI4 370 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 TP53INP2Q8IXH6 220 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 GPR135Q8IZ08 494 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 ZADH2Q8N4Q0 377 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 DENND1AQ8TEH3 1009 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 HEXDCQ8WVB3 486 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 LRRC45Q96CN5 670 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 CLIP3Q96DZ5 547 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 WDR24Q96S15 920 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 SMAD5Q99717 465 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 FERMT1Q9BQL6 677 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 CCM2Q9BSQ5 444 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 MAK16Q9BXY0 300 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 TRIM55Q9BYV6 548 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 TRIM7Q9C029 511 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 SLC25A51Q9H1U9 297 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 C1GALT1Q9NS00 363 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 IMP3Q9NV31 184 aaKnown RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 SCHIP1Q9P0W5 487 aaPredicted RBP6.15□□□□□ -1.42
CUX1-220ENST00000607092 UVRAGQ9P2Y5 699 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 TCFL5Q9UL49 500 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 BTRCQ9Y297 605 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 B3GNT3Q9Y2A9 372 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 ZNF711Q9Y462 761 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 SLC30A1Q9Y6M5 507 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 AP1M2Q9Y6Q5 423 aa6.15□□□□□ -1.42
CUX1-220ENST00000607092 CACNA1DQ01668 2161 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 DIDO1Q9BTC0 2240 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 F8P00451 2351 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 CSMD1Q96PZ7 3565 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 IGHV5-51A0A0C4DH38 117 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 SLC9B1P1A6NJY1 282 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 K7EM74 188 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 HNRNPRO43390 633 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 SEMA7AO75326 666 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 POP7O75817 140 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 ZNF189O75820 626 aaPredicted RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 DNAJB5O75953 348 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 PROSCO94903 275 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 LDLRP01130 860 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 CYP1A2P05177 515 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 EBLN1P0CF75 366 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 MTHFD1P11586 935 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 BRAFP15056 766 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 FOLR1P15328 257 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 HLA-DPA1P20036 260 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 IL4RP24394 825 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 SPAM1P38567 509 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 PTGIRP43119 386 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 DRG2P55039 364 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 RIPPLY3P57055 190 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 PPIDQ08752 370 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 NIPAL4Q0D2K0 466 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 PTPRRQ15256 657 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 RPE65Q16518 533 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 PPP2R5EQ16537 467 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 EIF2S3LQ2VIR3 472 aaKnown RBP6.14□□□□□ -1.43
CUX1-220ENST00000607092 PLA2G4EQ3MJ16 856 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 NADK2Q4G0N4 442 aa6.14□□□□□ -1.43
CUX1-220ENST00000607092 ALS2CLQ60I27 953 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms