RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 HNRNPKP61978 463 aaKnown RBP eCLIP14.1□□□□□ -0.15
UPF1-211ENST00000600868 PLOD1Q02809 727 aaPredicted RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 TMED2Q15363 201 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 INSCQ1MX18 579 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 ZNF423Q2M1K9 1284 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 TRIM61Q5EBN2 209 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 PLEKHS1Q5SXH7 462 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 IL27RAQ6UWB1 636 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CHST15Q7LFX5 561 aaPredicted RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 OTOAQ7RTW8 1153 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CCDC91Q7Z6B0 441 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CEP97Q8IW35 865 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CYP4X1Q8N118 509 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 HM13Q8TCT9 377 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CD200R1Q8TD46 325 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 MZB1Q8WU39 189 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 ELMO1Q92556 727 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 INPP5DQ92835 1189 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 PKNOX2Q96KN3 472 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 TMEM168Q9H0V1 697 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 CAB39LQ9H9S4 337 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 SARS2Q9NP81 518 aaKnown RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 TM7SF3Q9NS93 570 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 ZNF446Q9NWS9 450 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 GALPQ9UBC7 116 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 SLC23A2Q9UGH3 650 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 APOBEC3BQ9UH17 382 aaKnown RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 TRMT6Q9UJA5 497 aaKnown RBP14.1□□□□□ -0.15
UPF1-211ENST00000600868 WDFY4Q6ZS81 3184 aa14.1□□□□□ -0.15
UPF1-211ENST00000600868 TP53BP1Q12888 1972 aaPredicted RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 SLC5A10A0PJK1 596 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 PATE3B3GLJ2 98 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 AGPSO00116 658 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ATP8B1O43520 1251 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 GPC4O75487 556 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 RFPL1O75677 317 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 SASH3O75995 380 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 WISP3O95389 354 aaPredicted RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 APOA4P06727 396 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 SYPP08247 313 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ACP5P13686 325 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 CTSEP14091 401 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 TYK2P29597 1187 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 PBLDP30039 288 aaPredicted RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 GRIK2Q13002 908 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 RPA4Q13156 261 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 PDAP1Q13442 181 aaKnown RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 GBX1Q14549 363 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 PLA2G4EQ3MJ16 856 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 TTLL9Q3SXZ7 439 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ZNF542PQ5EBM4 170 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 METRNLQ641Q3 311 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 PIM3Q86V86 326 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 CFAP206Q8IYR0 622 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 SDR16C5Q8N3Y7 309 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ZBTB2Q8N680 514 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 SIDT2Q8NBJ9 832 aaKnown RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 GIMAP7Q8NHV1 300 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 GPBAR1Q8TDU6 330 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ACMSDQ8TDX5 336 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ASZ1Q8WWH4 475 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 FAM136AQ96C01 138 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 PGM2Q96G03 612 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 ELF4Q99607 663 aaPredicted RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 SLC30A3Q99726 388 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 NUSAP1Q9BXS6 441 aaKnown RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 TCEAL2Q9H3H9 227 aaPredicted RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 COG4Q9H9E3 785 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 SNX15Q9NRS6 342 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 KLC4Q9NSK0 619 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.09□□□□□ -0.15
UPF1-211ENST00000600868 GMEB2Q9UKD1 530 aa14.09□□□□□ -0.15
UPF1-211ENST00000600868 GOLGA6L10A6NI86 522 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 EIF3FO00303 357 aaPredicted RBP14.08□□□□□ -0.16
UPF1-211ENST00000600868 ARHGAP33O14559 1287 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 TPP1O14773 563 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 KHNYNO15037 678 aaKnown RBP14.08□□□□□ -0.16
UPF1-211ENST00000600868 RGS16O15492 202 aaPredicted RBP14.08□□□□□ -0.16
UPF1-211ENST00000600868 SLCO2B1O94956 709 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 MT-ND3P03897 115 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 MPOP05164 745 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 MYZAPP0CAP1 466 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 CBSLP0DN79 551 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 KRT15P19012 456 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 ATP5DP30049 168 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 CBSP35520 551 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 CTBSQ01459 385 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 ILF3Q12906 894 aaKnown RBP eCLIP14.08□□□□□ -0.16
UPF1-211ENST00000600868 BOP1Q14137 746 aaKnown RBP14.08□□□□□ -0.16
UPF1-211ENST00000600868 NFE2L1Q14494 772 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 PRRT3Q5FWE3 981 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 PAQR3Q6TCH7 311 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 XKR5Q6UX68 686 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 FAM83HQ6ZRV2 1179 aaPredicted RBP14.08□□□□□ -0.16
UPF1-211ENST00000600868 CMC1Q7Z7K0 106 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 NRROSQ86YC3 692 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 FSTL5Q8N475 847 aaPredicted RBP14.08□□□□□ -0.16
UPF1-211ENST00000600868 TMEM159Q96B96 161 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 CABS1Q96KC9 395 aa14.08□□□□□ -0.16
UPF1-211ENST00000600868 LRRC61Q9BV99 259 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms