RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AGAP9Q5VTM2 703 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 IYDQ6PHW0 289 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 ABRAXAS1Q6UWZ7 409 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 XKR5Q6UX68 686 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 FAM83HQ6ZRV2 1179 aaPredicted RBP18.99■□□□□ 0.63
UPF1-209ENST00000600310 CYS1Q717R9 158 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 C2CD4AQ8NCU7 369 aaPredicted RBP18.99■□□□□ 0.63
UPF1-209ENST00000600310 BIRC8Q96P09 236 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 PPANQ9NQ55 473 aaKnown RBP18.99■□□□□ 0.63
UPF1-209ENST00000600310 PRDM8Q9NQV8 689 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 GNPTGQ9UJJ9 305 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 CRYL1Q9Y2S2 319 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 PCDHB1Q9Y5F3 818 aa18.99■□□□□ 0.63
UPF1-209ENST00000600310 CEP250Q9BV73 2442 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 EME2A4GXA9 379 aaPredicted RBP18.98■□□□□ 0.63
UPF1-209ENST00000600310 OR5K4A6NMS3 321 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 GIPC1O14908 333 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 ESR1P03372 595 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 SLC2A4P14672 509 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 ACP1P24666 158 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 LEPRP48357 1165 aaKnown RBP18.98■□□□□ 0.63
UPF1-209ENST00000600310 EIF3BP55884 814 aaKnown RBP18.98■□□□□ 0.63
UPF1-209ENST00000600310 MPP1Q00013 466 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 ZNF789Q5FWF6 425 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 PTRHD1Q6GMV3 140 aaKnown RBP18.98■□□□□ 0.63
UPF1-209ENST00000600310 ZNF449Q6P9G9 518 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 KIAA0408Q6ZU52 694 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 C3orf62Q6ZUJ4 267 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 DGLUCYQ7Z3D6 616 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 CFAP206Q8IYR0 622 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 SFRP1Q8N474 314 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 TSSK1BQ9BXA7 367 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 COG4Q9H9E3 785 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 LRRC4CQ9HCJ2 640 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 FBXO6Q9NRD1 293 aaPredicted RBP18.98■□□□□ 0.63
UPF1-209ENST00000600310 ACSL5Q9ULC5 683 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 PADI4Q9UM07 663 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 NFU1Q9UMS0 254 aa18.98■□□□□ 0.63
UPF1-209ENST00000600310 KIR2DS5A0A0G2JLQ3 304 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 A0A0G2JNG1 304 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 SPAARA0A1B0GVQ0 90 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 IQCF5A8MTL0 148 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 PDZK1P1A8MUH7 402 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 H3BMM5 538 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 KIR2DS3K7RE56 304 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 BRAFP15056 766 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 FMO4P31512 558 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 ACADVLP49748 655 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 GPX6P59796 221 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 DNAJC3Q13217 504 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 KIR2DS5Q14953 304 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 CTSL3PQ5NE16 218 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 CAPN12Q6ZSI9 719 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 GALNT7Q86SF2 657 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 ARL14Q8N4G2 192 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 EIF1ADQ8N9N8 165 aaKnown RBP18.97■□□□□ 0.63
UPF1-209ENST00000600310 OR6C4Q8NGE1 309 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 PATE1Q8WXA2 126 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 NAT6Q93015 286 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 PANX3Q96QZ0 392 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 TOR4AQ9NXH8 423 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 PCDHGA1Q9Y5H4 931 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 PCNX2A6NKB5 2137 aa18.97■□□□□ 0.63
UPF1-209ENST00000600310 TCRBV9S1A1TA0A576 114 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 SPAG6O75602 509 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 HAUS5O94927 633 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 TRIM16O95361 564 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 F7P08709 466 aaPredicted RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 PKMP14618 531 aaKnown RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 GLB1P16278 677 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 RPL10P27635 214 aaKnown RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 GABRB3P28472 473 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 MAZP56270 477 aaKnown RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 SIM1P81133 766 aaPredicted RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 RPA4Q13156 261 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 ILKQ13418 452 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 SEPT7Q16181 437 aaKnown RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 GUSBP11Q6P575 273 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 CNSTQ6PJW8 725 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 KRT222Q8N1A0 295 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 LILRA3Q8N6C8 439 aaPredicted RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 MAPK15Q8TD08 544 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 LKAAEAR1Q8TD35 194 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 SLC37A2Q8TED4 501 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 ELMO1Q92556 727 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 SCHIP1Q9P0W5 487 aaPredicted RBP18.96■□□□□ 0.63
UPF1-209ENST00000600310 FAM8A1Q9UBU6 413 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 WDR37Q9Y2I8 494 aa18.96■□□□□ 0.63
UPF1-209ENST00000600310 TRBV23OR9-2A0A075B6M9 112 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 SLC5A10A0PJK1 596 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 CPED1A4D0V7 1026 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 LIN7AO14910 233 aaPredicted RBP18.95■□□□□ 0.62
UPF1-209ENST00000600310 NUDT21O43809 227 aaKnown RBP18.95■□□□□ 0.62
UPF1-209ENST00000600310 AHSGP02765 367 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 ITGB6P18564 788 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 CCR7P32248 378 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 FASLGP48023 281 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 CLCA4Q14CN2 919 aa18.95■□□□□ 0.62
UPF1-209ENST00000600310 EFL1Q7Z2Z2 1120 aaKnown RBP18.95■□□□□ 0.62
UPF1-209ENST00000600310 AVL9Q8NBF6 648 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms