RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SOWAHDA6NJG2 315 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 GAPDHSO14556 408 aaPredicted RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 TERTO14746 1132 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 KIF1CO43896 1103 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 ZNF189O75820 626 aaPredicted RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 SRP72O76094 671 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 TJP3O95049 919 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 CRTAMO95727 393 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 MT-ND3P03897 115 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 SLC35G4P0C7Q5 338 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 CCNYL3P0C7X3 344 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 RBP3P10745 1247 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 RALBP11234 206 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 MTHFD1P11586 935 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 ZNF28P17035 718 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 NELFEP18615 380 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 PSMB4P28070 264 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 OAS2P29728 719 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 RWDD2BP57060 319 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 TUBB3Q13509 450 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 PTPRCAPQ14761 206 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 DEFB109BQ30KR1 87 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 DNTTIP2Q5QJE6 756 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 ANKRD20A2Q5SQ80 823 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 ANKRD20A1Q5TYW2 823 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 ANKRD20A3Q5VUR7 823 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 ARMC6Q6NXE6 501 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 DARS2Q6PI48 645 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 FAM83HQ6ZRV2 1179 aaPredicted RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 OOSP2Q86WS3 158 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 PTRH1Q86Y79 214 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 C9orf43Q8TAL5 461 aaPredicted RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 APOBEC4Q8WW27 367 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 KLHL6Q8WZ60 621 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 RNF31Q96EP0 1072 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 DCUN1D1Q96GG9 259 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 C12orf66Q96MD2 445 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 PANX2Q96RD6 677 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 APOL2Q9BQE5 337 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 FAM8A1Q9UBU6 413 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 IL17BQ9UHF5 180 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 FKBPLQ9UIM3 349 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 KCND3Q9UK17 655 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 CROTQ9UKG9 612 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 RARRES3Q9UL19 164 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 PCDHA3Q9Y5H8 950 aa9.59□□□□□ -0.87
VRK3-216ENST00000599342 CFAP20Q9Y6A4 193 aaKnown RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 EPN1Q9Y6I3 576 aaPredicted RBP9.59□□□□□ -0.87
VRK3-216ENST00000599342 GOLGA6L9A6NEM1 432 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 OR5K3A6NET4 321 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 MGAT4DA6NG13 374 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 TLCD2A6NGC4 264 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 CFAP99D6REC4 459 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 KATNA1O75449 491 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 SPAG6O75602 509 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 PYGMP11217 842 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 FGF5P12034 268 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 ITGALP20701 1170 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 CA5AP35218 305 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 PTPN7P35236 360 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 HADHAP40939 763 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 PPP1CAP62136 330 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 ACY1Q03154 408 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 OLIG2Q13516 323 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 KRT33BQ14525 404 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 GSE1Q14687 1217 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.58□□□□□ -0.88
VRK3-216ENST00000599342 BCL7AQ4VC05 210 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 CRTC2Q53ET0 693 aaPredicted RBP9.58□□□□□ -0.88
VRK3-216ENST00000599342 METRNLQ641Q3 311 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 RANBP10Q6VN20 620 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 KMT5CQ86Y97 462 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 TMTC1Q8IUR5 882 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 OR2L2Q8NH16 312 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 CCDC110Q8TBZ0 833 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 ULK4Q96C45 1275 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 SLC41A2Q96JW4 573 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 SPATA13Q96N96 652 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 CD180Q99467 661 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 FAM118BQ9BPY3 351 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 TBL1YQ9BQ87 522 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 GORASP1Q9BQQ3 440 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 WWP1Q9H0M0 922 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 FEZ2Q9UHY8 353 aaPredicted RBP9.58□□□□□ -0.88
VRK3-216ENST00000599342 ACSL5Q9ULC5 683 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 KCTD3Q9Y597 815 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 MRPS18BQ9Y676 258 aaKnown RBP9.58□□□□□ -0.88
VRK3-216ENST00000599342 COLEC10Q9Y6Z7 277 aa9.58□□□□□ -0.88
VRK3-216ENST00000599342 ZNF106Q9H2Y7 1883 aaKnown RBP9.57□□□□□ -0.88
VRK3-216ENST00000599342 IGHV5-51A0A0C4DH38 117 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 RCCD1A6NED2 376 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 GOLGA6L3A6NEY3 463 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 BTNL10A8MVZ5 291 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 NDUFS1P28331 727 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 ADRA1AP35348 466 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 TMPRSS15P98073 1019 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 TLE1Q04724 770 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 PRKAA1Q13131 559 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 ERV3-1Q14264 604 aa9.57□□□□□ -0.88
VRK3-216ENST00000599342 KCNAB1Q14722 419 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms