RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ZDHHC20Q5W0Z9 365 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 CAPRIN2Q6IMN6 1127 aaKnown RBP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 PWWP2BQ6NUJ5 590 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 SYVN1Q86TM6 617 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TRAPPC5Q8IUR0 188 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TMTC1Q8IUR5 882 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 RCOR2Q8IZ40 523 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 EFCAB3Q8N7B9 438 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 ACRBPQ8NEB7 543 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TFB1MQ8WVM0 346 aaKnown RBP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 HAUS1Q96CS2 278 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TTC25Q96NG3 672 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 CD180Q99467 661 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 C10orf88Q9H8K7 445 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 MLXIPLQ9NP71 852 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 UBP1Q9NZI7 540 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TRIM10Q9UDY6 481 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 PCDHGA9Q9Y5G4 932 aaKnown RBP12.25□□□□□ -0.45
TRIM28-212ENST00000597995 SPO11Q9Y5K1 396 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TEX15Q9BXT5 2789 aa12.25□□□□□ -0.45
TRIM28-212ENST00000597995 TTLL8A6PVC2 850 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 AURKAO14965 403 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 PMPCBO75439 489 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 DNAJB5O75953 348 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 SLC4A1P02730 911 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 CTNNA1P35221 906 aaKnown RBP12.24□□□□□ -0.45
TRIM28-212ENST00000597995 PDE1BQ01064 536 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 NOTCH2Q04721 2471 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 NOMO1Q15155 1222 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 PCSK7Q16549 785 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 ODF2Q5BJF6 829 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 FHL5Q5TD97 284 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 PAPD7Q5XG87 772 aaKnown RBP12.24□□□□□ -0.45
TRIM28-212ENST00000597995 KDELC1Q6UW63 502 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 BBS12Q6ZW61 710 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 DAAM2Q86T65 1068 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 ZC3H18Q86VM9 953 aaKnown RBP12.24□□□□□ -0.45
TRIM28-212ENST00000597995 AMZ2Q86W34 360 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 CPT1CQ8TCG5 803 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 ZNF514Q96K75 400 aaPredicted RBP12.24□□□□□ -0.45
TRIM28-212ENST00000597995 HEMGNQ9BXL5 484 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 TRIM55Q9BYV6 548 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 ZCCHC2Q9C0B9 1178 aaKnown RBP12.24□□□□□ -0.45
TRIM28-212ENST00000597995 TRABDQ9H4I3 376 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 FGF21Q9NSA1 209 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 FARSAQ9Y285 508 aaKnown RBP12.24□□□□□ -0.45
TRIM28-212ENST00000597995 PCDHGB7Q9Y5F8 929 aa12.24□□□□□ -0.45
TRIM28-212ENST00000597995 LOC285095A0A1B0GVY8 99 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 TLCD2A6NGC4 264 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 BTNL10A8MVZ5 291 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 F5H423 210 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 PJA2O43164 708 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 POP7O75817 140 aaKnown RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 AGFG2O95081 481 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 EPOP01588 193 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 NFKB1P19838 968 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 LPOP22079 712 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 GNLYP22749 145 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ARL4DP49703 201 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 PGDP52209 483 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 PPP1CAP62136 330 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 HSD11B2P80365 405 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 LAMB3Q13751 1172 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 RPE65Q16518 533 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 PPP2R5EQ16537 467 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 LDLRAP1Q5SW96 308 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 AADACL2Q6P093 401 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ZNF517Q6ZMY9 492 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 BZW1Q7L1Q6 419 aaKnown RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ZNF567Q8N184 647 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 CARFQ8N187 725 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 D2HGDHQ8N465 521 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 RASGEF1AQ8N9B8 481 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 LRRC57Q8N9N7 239 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 OR8K5Q8NH50 307 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 GDAP1Q8TB36 358 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ZFPM2Q8WW38 1151 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ALG3Q92685 438 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 P3H4Q92791 437 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 OXNAD1Q96HP4 312 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 QKIQ96PU8 341 aaKnown RBP eCLIP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 MAP3K3Q99759 626 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 GORASP1Q9BQQ3 440 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 SLC25A23Q9BV35 468 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 AKIRIN1Q9H9L7 192 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 BPIFA1Q9NP55 256 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 IL26Q9NPH9 171 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ACSS2Q9NR19 701 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 CUEDC1Q9NWM3 386 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 PLEKHB1Q9UF11 243 aaPredicted RBP12.23□□□□□ -0.45
TRIM28-212ENST00000597995 MAP4K5Q9Y4K4 846 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 PCDHA3Q9Y5H8 950 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 ESPL1Q14674 2120 aa12.23□□□□□ -0.45
TRIM28-212ENST00000597995 MED13Q9UHV7 2174 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 UBA6A0AVT1 1052 aaPredicted RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 GRID2IPA4D2P6 1211 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 OR5K3A6NET4 321 aa12.22□□□□□ -0.45
TRIM28-212ENST00000597995 CPNE3O75131 537 aaKnown RBP12.22□□□□□ -0.45
TRIM28-212ENST00000597995 EBLN1P0CF75 366 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms