RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 GALNT17Q6IS24 598 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 IRGCQ6NXR0 463 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 PRSS57Q6UWY2 283 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 CCBE1Q6UXH8 406 aaPredicted RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 C16orf82Q7Z2V1 217 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 ANKRD52Q8NB46 1076 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 ZNF114Q8NC26 417 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 LMO3Q8TAP4 145 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 BRSK1Q8TDC3 778 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 HARBI1Q96MB7 349 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 TMEM68Q96MH6 324 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 SLX1AQ9BQ83 275 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 GPATCH1Q9BRR8 931 aaKnown RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 EDEM3Q9BZQ6 932 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 PPP1R3EQ9H7J1 279 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 SLC28A3Q9HAS3 691 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 GRPEL1Q9HAV7 217 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 XAB2Q9HCS7 855 aaKnown RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 RRP7BPQ9NSQ0 103 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 RASAL2Q9UJF2 1139 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 VPS28Q9UK41 221 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 KCNE2Q9Y6J6 123 aa4.87□□□□□ -1.63
SMAD4-216ENST00000593223 ZFP37Q9Y6Q3 630 aaPredicted RBP4.87□□□□□ -1.63
SMAD4-216ENST00000593223 TNRC6CQ9HCJ0 1690 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 QSER1Q2KHR3 1735 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 TUBGCP6Q96RT7 1819 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 CASP8AP2Q9UKL3 1982 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SPTBN5Q9NRC6 3674 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 FAM237AA0A1B0GTK4 181 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 VCYO14598 125 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 PLRG1O43660 514 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 KIAA0754O94854 1291 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 KDM4BO94953 1096 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 AFPP02771 609 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SRCP12931 536 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SCG2P13521 617 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 MAOAP21397 527 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 PBX3P40426 434 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 MSH2P43246 934 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 DLG1Q12959 904 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 KRT32Q14532 448 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 DEFB115Q30KQ5 88 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 C9orf57Q5W0N0 161 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 HAUS3Q68CZ6 603 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 RGMBQ6NW40 437 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 KCTD18Q6PI47 426 aaPredicted RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 CCNI2Q6ZMN8 369 aaPredicted RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 TMTC3Q6ZXV5 915 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 ARMC9Q7Z3E5 817 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 RBM23Q86U06 439 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SLC9B2Q86UD5 537 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 UNC45BQ8IWX7 931 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 FRMD1Q8N878 549 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 TMEM116Q8NCL8 245 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 ZNF606Q8WXB4 792 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 ITFG2Q969R8 447 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 MMABQ96EY8 250 aaPredicted RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 IGSF21Q96ID5 467 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 DUX5Q96PT3 197 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SH3GL2Q99962 352 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 C1QTNF4Q9BXJ3 329 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 FBRSL1Q9HCM7 1045 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 TRMT1Q9NXH9 659 aaKnown RBP4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SMARCAL1Q9NZC9 954 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SUN2Q9UH99 717 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 PROCRQ9UNN8 238 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 ZNF711Q9Y462 761 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 BCL9O00512 1426 aa4.86□□□□□ -1.63
SMAD4-216ENST00000593223 SAA2-SAA4A0A096LPE2 208 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 A0A0G2JLW4 131 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 FAM237BA0A1B0GVD1 139 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 SRRM3A6NNA2 597 aaPredicted RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 H0Y626 953 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 PAGE4O60829 102 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 IPO7O95373 1038 aaKnown RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 SLC4A1P02730 911 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 CHMP24386 653 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 BDKRB2P30411 391 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 F2RL1P55085 397 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 ARF3P61204 181 aaPredicted RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 ARF1P84077 181 aaKnown RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 AKAP17AQ02040 695 aaKnown RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 TNFAIP1Q13829 316 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 RASA2Q15283 850 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 OASLQ15646 514 aaKnown RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 GPR139Q6DWJ6 353 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 PLEKHA7Q6IQ23 1121 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 FAM122CQ6P4D5 195 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 SPSB3Q6PJ21 355 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 PQLC2Q6ZP29 291 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 RUFY3Q7L099 469 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 RPAP2Q8IXW5 612 aaPredicted RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 NAT8LQ8N9F0 302 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 AVL9Q8NBF6 648 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 NEK9Q8TD19 979 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 TANKQ92844 425 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 BICD1Q96G01 975 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 ZNF385AQ96PM9 386 aaKnown RBP4.85□□□□□ -1.63
SMAD4-216ENST00000593223 CTAGE1Q96RT6 745 aa4.85□□□□□ -1.63
SMAD4-216ENST00000593223 MAP7D2Q96T17 732 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms