RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 POLBP06746 335 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 CHRM4P08173 479 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 UQCRFS1P1P0C7P4 283 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 ITGAXP20702 1163 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 HNRNPH1P31943 449 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 MAGEA9P43362 315 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 VEGFCP49767 419 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 RELQ04864 619 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 CCDC96Q2M329 555 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 CCDC57Q2TAC2 916 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 FAM133BQ5BKY9 247 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 SLC9C2Q5TAH2 1124 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 RAD9BQ6WBX8 426 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 B3GNT6Q6ZMB0 384 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 CCNI2Q6ZMN8 369 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 DSG4Q86SJ6 1040 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 HEATR4Q86WZ0 1026 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 WDSUB1Q8N9V3 476 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 PCYOX1LQ8NBM8 494 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 CCDC12Q8WUD4 166 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 AFG1LQ8WV93 481 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 OTULINQ96BN8 352 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 RPGRIP1Q96KN7 1286 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 PYM1Q9BRP8 204 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 TRMT61BQ9BVS5 477 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 TEX13AQ9BXU3 409 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 PUS3Q9BZE2 481 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 KRT23Q9C075 422 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 EGLN1Q9GZT9 426 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 LY9Q9HBG7 655 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 MED4Q9NPJ6 270 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 WASH6PQ9NQA3 447 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 SAMSN1Q9NSI8 373 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 IRAK4Q9NWZ3 460 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 CISD1Q9NZ45 108 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 TAAR2Q9P1P5 351 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 SLC13A4Q9UKG4 626 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 NAP1L2Q9ULW6 460 aaPredicted RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 NFE2L3Q9Y4A8 694 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 MMP24Q9Y5R2 645 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 A3GALT2U3KPV4 340 aa3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 AFDNP55196 1824 aaKnown RBP3.99□□□□□ -1.77
SMCHD1-208ENST00000583344 UBN2Q6ZU65 1347 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 CDHR2Q9BYE9 1310 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 CCDC196A0A1B0GTZ2 297 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 ANKRD18BA2A2Z9 1011 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 CTAGE9A4FU28 777 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 A6NLC8 198 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 H3BQF6 201 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 PSMD14O00487 310 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 CEP104O60308 925 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 RANBP6O60518 1105 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 GFPT2O94808 682 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 NDUFB4O95168 129 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 DEXIO95424 95 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 TK1P04183 234 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 SRCP12931 536 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 HLA-DOBP13765 273 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 PRLRP16471 622 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 ZNF8P17098 575 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 RXRAP19793 462 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 STX2P32856 288 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 PIP4K2AP48426 406 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 HAND2P61296 217 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 ERVK11-1P61568 191 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 SPAG1Q07617 926 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 GOLGA8DPQ0D2H9 430 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 CASP8Q14790 479 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 FCN2Q15485 313 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 CCDC6Q16204 474 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 EDRF1Q3B7T1 1238 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 ITPRIPL1Q6GPH6 555 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 C16orf54Q6UWD8 224 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 LEKR1Q6ZMV7 388 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 LRRTM4Q86VH4 590 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 OR8H2Q8N162 312 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 NEK11Q8NG66 645 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 BBS10Q8TAM1 723 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 UCMAQ8WVF2 138 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 RAB40AQ8WXH6 277 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 RND1Q92730 232 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 ZNF501Q96CX3 271 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 PAGE5Q96GU1 130 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 NAPGQ99747 312 aaPredicted RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 NUDT16L1Q9BRJ7 211 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 HAUS4Q9H6D7 363 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 YY1AP1Q9H869 796 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 PLEKHA5Q9HAU0 1116 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 RIC8AQ9NPQ8 531 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 ABCF3Q9NUQ8 709 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 DDX43Q9NXZ2 648 aaKnown RBP3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 TCF19Q9Y242 345 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 DNAJC16Q9Y2G8 782 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 PCDHGB5Q9Y5G0 923 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 COL18A1P39060 1754 aa3.98□□□□□ -1.77
SMCHD1-208ENST00000583344 AFF2P51816 1311 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 ATXN2Q99700 1313 aaKnown RBP3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 LAMB4A4D0S4 1761 aa3.97□□□□□ -1.77
SMCHD1-208ENST00000583344 COL16A1Q07092 1604 aaPredicted RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms