RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ADAM5Q6NVV9 412 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 RPAP2Q8IXW5 612 aaPredicted RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 ZNF524Q96C55 264 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 F2RL3Q96RI0 385 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 BARD1Q99728 777 aaKnown RBP5.91□□□□□ -1.46
SS18-214ENST00000580003 HAUS2Q9NVX0 235 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 MIOSQ9NXC5 875 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 PTTG2Q9NZH5 202 aa5.91□□□□□ -1.46
SS18-214ENST00000580003 A6NCN8 305 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 GPR137BO60478 399 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 SYNCRIPO60506 623 aaKnown RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 CIDEAO60543 219 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 CFC1BP0CG36 223 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 CFC1P0CG37 223 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 FGF5P12034 268 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 GNAZP19086 355 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 CRIP2P52943 208 aaPredicted RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 DLG2Q15700 870 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 RAB41Q5JT25 222 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 ANO5Q75V66 913 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 FASTKD5Q7L8L6 764 aaKnown RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 ZBTB8BQ8NAP8 495 aaPredicted RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 ZNF501Q96CX3 271 aaPredicted RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 FAM120BQ96EK7 910 aaKnown RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 CEP295NLQ96MC4 621 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 SDF4Q9BRK5 362 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 CHMP1AQ9HD42 196 aaPredicted RBP5.9□□□□□ -1.46
SS18-214ENST00000580003 TBC1D22BQ9NU19 505 aa5.9□□□□□ -1.46
SS18-214ENST00000580003 A0A0G2JLW4 131 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 BLOC1S5-TXNDC5H3BN57 136 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 CLIC2O15247 247 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 LDLRP01130 860 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 H1F0P07305 194 aaKnown RBP5.89□□□□□ -1.47
SS18-214ENST00000580003 TUBBP07437 444 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 MMP9P14780 707 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 PSMC4P43686 418 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 TUBB4BP68371 445 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 CREB5Q02930 508 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 MFAP5Q13361 173 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 CCDC6Q16204 474 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 MRGPRG-AS1Q2M3A8 158 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 DUSP28Q4G0W2 176 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 PLEKHS1Q5SXH7 462 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 ADALQ6DHV7 355 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 ITPRIPL1Q6GPH6 555 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 KLC3Q6P597 504 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 TBC1D16Q8TBP0 767 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 LRRC59Q96AG4 307 aaKnown RBP5.89□□□□□ -1.47
SS18-214ENST00000580003 TAS2R14Q9NYV8 317 aa5.89□□□□□ -1.47
SS18-214ENST00000580003 ZNF624Q9P2J8 865 aaPredicted RBP5.89□□□□□ -1.47
SS18-214ENST00000580003 SUCLA2Q9P2R7 463 aaPredicted RBP5.89□□□□□ -1.47
SS18-214ENST00000580003 ZNF644Q9H582 1327 aaPredicted RBP5.89□□□□□ -1.47
SS18-214ENST00000580003 A0A1W2PR77 199 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 DUXAA6NLW8 204 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 EDIL3O43854 480 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 TSPAN9O75954 239 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 GCNT3O95395 438 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 PRLRP16471 622 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 CKMT2P17540 419 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 SLC15A1P46059 708 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 PLA2G7Q13093 441 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 SIM2Q14190 667 aaPredicted RBP5.88□□□□□ -1.47
SS18-214ENST00000580003 CEP85LQ5SZL2 805 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 GCNT6Q5T4J0 391 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 RBMS3Q6XE24 437 aaKnown RBP5.88□□□□□ -1.47
SS18-214ENST00000580003 INTS8Q75QN2 995 aaKnown RBP5.88□□□□□ -1.47
SS18-214ENST00000580003 TRPT1Q86TN4 253 aaKnown RBP5.88□□□□□ -1.47
SS18-214ENST00000580003 GPALPP1Q8IXQ4 340 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 C17orf53Q8N3J3 647 aaPredicted RBP5.88□□□□□ -1.47
SS18-214ENST00000580003 FAM76AQ8TAV0 307 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 SLC22A12Q96S37 553 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 PSD2Q9BQI7 771 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 RTN4RQ9BZR6 473 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 SCRT2Q9NQ03 307 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 ECHDC1Q9NTX5 307 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 ARHGEF38Q9NXL2 777 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 SEC63Q9UGP8 760 aaKnown RBP5.88□□□□□ -1.47
SS18-214ENST00000580003 VPS28Q9UK41 221 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 ACAD8Q9UKU7 415 aa5.88□□□□□ -1.47
SS18-214ENST00000580003 TEX13DA0A0J9YY54 714 aaPredicted RBP5.87□□□□□ -1.47
SS18-214ENST00000580003 ANKRD18BA2A2Z9 1011 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 GAS8-AS1O95177 125 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 RPS18P62269 152 aaKnown RBP5.87□□□□□ -1.47
SS18-214ENST00000580003 TMF1P82094 1093 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 ZNF876PQ49A33 203 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 FAM98BQ52LJ0 330 aaKnown RBP5.87□□□□□ -1.47
SS18-214ENST00000580003 ZC2HC1CQ53FD0 456 aaPredicted RBP5.87□□□□□ -1.47
SS18-214ENST00000580003 HYIQ5T013 277 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 ALS2CLQ60I27 953 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 SZRD1Q7Z422 152 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 L3MBTL4Q8NA19 623 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 ZNF582Q96NG8 517 aaPredicted RBP5.87□□□□□ -1.47
SS18-214ENST00000580003 GHITMQ9H3K2 345 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 ZNF696Q9H7X3 374 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 HHATLQ9HCP6 504 aa5.87□□□□□ -1.47
SS18-214ENST00000580003 DDX43Q9NXZ2 648 aaKnown RBP5.87□□□□□ -1.47
SS18-214ENST00000580003 AGAP14A8MT82 685 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 CTDSP2O14595 271 aa5.86□□□□□ -1.47
SS18-214ENST00000580003 PAK4O96013 591 aaPredicted RBP5.86□□□□□ -1.47
SS18-214ENST00000580003 EPHA2P29317 976 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms