RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 NDOR1Q9UHB4 597 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 PPT2Q9UMR5 302 aa15.71■□□□□ 0.11
VPS53-218ENST00000575207 TGP01266 2768 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 CHD3Q12873 2000 aaKnown RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 NKX2-6A6NCS4 301 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 E7EQ34 232 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 DDX3YO15523 660 aaKnown RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 VEGFDO43915 354 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 ATE1O95260 518 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 RAF1P04049 648 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 RPL10P27635 214 aaKnown RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 EPHB2P29323 1055 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 ZFYVE27Q5T4F4 411 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 LRRC66Q68CR7 880 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 CHSY3Q70JA7 882 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 EID3Q8N140 333 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 ASB5Q8WWX0 329 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 GPATCH1Q9BRR8 931 aaKnown RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 CINPQ9BW66 212 aaPredicted RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 LRRC19Q9H756 370 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 HRASLS2Q9NWW9 162 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 PLA2G3Q9NZ20 509 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 IFT80Q9P2H3 777 aaPredicted RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 ATXN10Q9UBB4 475 aa15.7■□□□□ 0.1
VPS53-218ENST00000575207 LUC7L2Q9Y383 392 aaKnown RBP15.7■□□□□ 0.1
VPS53-218ENST00000575207 HAX1O00165 279 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 MTA2O94776 668 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 YEATS4O95619 227 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 ZNF8P17098 575 aaPredicted RBP15.69■□□□□ 0.1
VPS53-218ENST00000575207 DCDP81605 110 aaKnown RBP15.69■□□□□ 0.1
VPS53-218ENST00000575207 ATP11AP98196 1134 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 RABEP1Q15276 862 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 KIRREL2Q6UWL6 708 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 USP45Q70EL2 814 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 CDC20BQ86Y33 519 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 CIARTQ8N365 385 aaPredicted RBP15.69■□□□□ 0.1
VPS53-218ENST00000575207 TAB3Q8N5C8 712 aaPredicted RBP15.69■□□□□ 0.1
VPS53-218ENST00000575207 PPM1MQ96MI6 270 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 UCK2Q9BZX2 261 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 KCNJ16Q9NPI9 418 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 FAM207AQ9NSI2 230 aaPredicted RBP15.69■□□□□ 0.1
VPS53-218ENST00000575207 TMEM59LQ9UK28 342 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 HS3ST3B1Q9Y662 390 aa15.69■□□□□ 0.1
VPS53-218ENST00000575207 GPR89AB7ZAQ6 455 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 P4HA2O15460 535 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 GPR89BP0CG08 455 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 SYT1P21579 422 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 SOX11P35716 441 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 GABRB2P47870 512 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 PREPP48147 710 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 KPNA2P52292 529 aaKnown RBP15.68■□□□□ 0.1
VPS53-218ENST00000575207 INSCQ1MX18 579 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 RHBDD2Q6NTF9 364 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 FBXO38Q6PIJ6 1188 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 ARCQ7LC44 396 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 RAVER1Q8IY67 606 aaKnown RBP15.68■□□□□ 0.1
VPS53-218ENST00000575207 CPSF7Q8N684 471 aaKnown RBP15.68■□□□□ 0.1
VPS53-218ENST00000575207 EHBP1Q8NDI1 1231 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 PROKR1Q8TCW9 393 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 PSKH2Q96QS6 385 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 AP1M1Q9BXS5 423 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 NEUROD4Q9HD90 331 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 CDYLQ9Y232 598 aa15.68■□□□□ 0.1
VPS53-218ENST00000575207 FADS2P1A8MWK0 482 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 CHUKO15111 745 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 GADD45BO75293 160 aaPredicted RBP15.67■□□□□ 0.1
VPS53-218ENST00000575207 TPOP07202 933 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 ZNF7P17097 686 aaPredicted RBP15.67■□□□□ 0.1
VPS53-218ENST00000575207 IDSP22304 550 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 CTSCP53634 463 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 RFTN1Q14699 578 aaPredicted RBP15.67■□□□□ 0.1
VPS53-218ENST00000575207 TUBB8Q3ZCM7 444 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 HMBOX1Q6NT76 420 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 PODNL1Q6PEZ8 512 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 NAPRTQ6XQN6 538 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 C3P1Q6ZMU1 363 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 C16orf47Q6ZP98 133 aaPredicted RBP15.67■□□□□ 0.1
VPS53-218ENST00000575207 CLYBLQ8N0X4 340 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 GPR150Q8NGU9 434 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 GOT1L1Q8NHS2 421 aaPredicted RBP15.67■□□□□ 0.1
VPS53-218ENST00000575207 WDR24Q96S15 920 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 TIMM29Q9BSF4 260 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS53-218ENST00000575207 UBE2TQ9NPD8 197 aaPredicted RBP15.67■□□□□ 0.1
VPS53-218ENST00000575207 TRPS1Q9UHF7 1281 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 CDC23Q9UJX2 597 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 DNAJC16Q9Y2G8 782 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 WDR37Q9Y2I8 494 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 L3MBTL1Q9Y468 752 aa15.67■□□□□ 0.1
VPS53-218ENST00000575207 FAM90A27PA6NNH2 459 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 BECN2A8MW95 431 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 IDSB3KWA1 339 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 KLK8O60259 260 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 PYGMP11217 842 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 CHRNB4P30926 498 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 RENBPP51606 427 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 STC1P52823 247 aa15.66■□□□□ 0.1
VPS53-218ENST00000575207 DRG2P55039 364 aaKnown RBP15.66■□□□□ 0.1
VPS53-218ENST00000575207 NKX6-1P78426 367 aaPredicted RBP15.66■□□□□ 0.1
VPS53-218ENST00000575207 FKBP3Q00688 224 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms