RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZNF567Q8N184 647 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 LILRA3Q8N6C8 439 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 BEND7Q8N7W2 519 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 AVL9Q8NBF6 648 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 DDHD1Q8NEL9 900 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 CT55Q8WUE5 264 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 APOBEC4Q8WW27 367 aaKnown RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 KIAA1143Q96AT1 154 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 MIB2Q96AX9 1013 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ELMO2Q96JJ3 720 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 PPM1MQ96MI6 270 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 FCRL5Q96RD9 977 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 MAP3K3Q99759 626 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 TRIM55Q9BYV6 548 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ACBD3Q9H3P7 528 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 NHEJ1Q9H9Q4 299 aaPredicted RBP6.58□□□□□ -1.36
VPS53-213ENST00000572334 LHX9Q9NQ69 397 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 RAD18Q9NS91 495 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ABHD10Q9NUJ1 306 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 HAUS2Q9NVX0 235 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 PSD3Q9NYI0 1048 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ANKMY1Q9P2S6 941 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 LCMT1Q9UIC8 334 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 TFR2Q9UP52 801 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 PLAAQ9Y263 795 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS53-213ENST00000572334 NOTCH2Q04721 2471 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ZGRF1Q86YA3 2104 aa6.58□□□□□ -1.36
VPS53-213ENST00000572334 ITPR2Q14571 2701 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 UNC79Q9P2D8 2635 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 hCG_1818297A0A087WSY0 165 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 OR2AG2A6NM03 316 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 AGAP14A8MT82 685 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 VGLL3A8MV65 326 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 MTSS1O43312 755 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 CST8O60676 142 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 CREG1O75629 220 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 POP7O75817 140 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 DNAJB5O75953 348 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 SLU7O95391 586 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 EPOP01588 193 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 TUBBP07437 444 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 EBLN1P0CF75 366 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 TNNT1P13805 278 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 ZFXP17010 805 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 IDSP22304 550 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 ADRA1AP35348 466 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 SPAM1P38567 509 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 NR2C2P49116 596 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 HADHBP55084 474 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 RPS18P62269 152 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 XIAPP98170 497 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 MC1RQ01726 317 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 TBX2Q13207 712 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 DNASE1L3Q13609 305 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 UBAP2LQ14157 1087 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 SLC1A5Q15758 541 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 ZNF658BQ4V348 819 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 LACTB2Q53H82 288 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 ZFYVE27Q5T4F4 411 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 GPRC6AQ5T6X5 926 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 METRNLQ641Q3 311 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 LCN10Q6JVE6 187 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 TCTN3Q6NUS6 607 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 IRGCQ6NXR0 463 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 DUS1LQ6P1R4 473 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 FAM199XQ6PEV8 388 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 TMEM220Q6QAJ8 160 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 FAM151BQ6UXP7 276 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 AMZ2Q86W34 360 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 TRAPPC5Q8IUR0 188 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 APLFQ8IW19 511 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 TRIM48Q8IWZ4 208 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 RHOT2Q8IXI1 618 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 RHOT1Q8IXI2 618 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 RBM12BQ8IXT5 1001 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 SLC25A41Q8N5S1 370 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 SLC38A9Q8NBW4 561 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 TFB1MQ8WVM0 346 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 INSM2Q96T92 566 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 NRTNQ99748 197 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 MAK16Q9BXY0 300 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 TRABDQ9H4I3 376 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 C10orf88Q9H8K7 445 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 SMOXQ9NWM0 555 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 DDX56Q9NY93 547 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 FAM153AQ9UHL3 310 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 FEZ2Q9UHY8 353 aaPredicted RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 TLK1Q9UKI8 766 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 PSMD13Q9UNM6 376 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 KCTD3Q9Y597 815 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 CFAP20Q9Y6A4 193 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 POLEQ07864 2286 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 SVILO95425 2214 aa6.57□□□□□ -1.36
VPS53-213ENST00000572334 DIDO1Q9BTC0 2240 aaKnown RBP6.57□□□□□ -1.36
VPS53-213ENST00000572334 HEATR5BQ9P2D3 2071 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 GLYATL1P3A0A0U1RQE8 302 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 OR5K3A6NET4 321 aa6.56□□□□□ -1.36
VPS53-213ENST00000572334 GOLGA6L19H0YKK7 550 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms