RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FITM2Q8N6M3 262 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 XXYLT1Q8NBI6 393 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CMASQ8NFW8 434 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 VN1R2Q8NFZ6 395 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 LNX1Q8TBB1 728 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 KIAA1524Q8TCG1 905 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 DUSP19Q8WTR2 217 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 C18orf25Q96B23 403 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 PERPQ96FX8 193 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CFAP36Q96G28 342 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 C20orf173Q96LM9 149 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 ZNF560Q96MR9 790 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CMTM3Q96MX0 182 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 ADOQ96SZ5 270 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 NAA11Q9BSU3 229 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 MLPHQ9BV36 600 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 VN1R3Q9BXE9 311 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 GPR87Q9BY21 358 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 CPEB1Q9BZB8 566 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 ABCG8Q9H221 673 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 HSD3B7Q9H2F3 369 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 UNKLQ9H9P5 680 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 MBNL1Q9NR56 388 aaKnown RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 C6orf203Q9P0P8 240 aaPredicted RBP6.13□□□□□ -1.43
VPS53-212ENST00000572259 SUN2Q9UH99 717 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 ST6GALNAC2Q9UJ37 374 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 NFU1Q9UMS0 254 aa6.13□□□□□ -1.43
VPS53-212ENST00000572259 LOC102723971A0A1B0GUV8 181 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 GOLGA8IPA6NC78 632 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 URADA6NGE7 173 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 OR6C75A6NL08 312 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 GOLGA8JA6NMD2 632 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 F8W810 466 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 M0QZQ0 153 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 MYO1CO00159 1063 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 RAB27BO00194 218 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PIRO00625 290 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PDXKO00764 312 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PRRG1O14668 218 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CLIC2O15247 247 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CCP110O43303 1012 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 FAM189A1O60320 539 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 HUS1O60921 280 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SLC43A1O75387 559 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 HAUS5O94927 633 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ABCB1P08183 1280 aaPredicted RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 KRT19P08727 400 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 RARGP13631 454 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 TNNI1P19237 187 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 KELP23276 732 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 TKTP29401 623 aaKnown RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 PPP1R2P41236 205 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 BRCC3P46736 316 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 NPY4RP50391 375 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ZNF81P51508 661 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CYP2J2P51589 502 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CDH8P55286 799 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 WNT3P56703 355 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 LILRA4P59901 499 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 KCNJ10P78508 379 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SPAG1Q07617 926 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SMARCB1Q12824 385 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 LMAN2Q12907 356 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PDCLQ13371 301 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ATP1A4Q13733 1029 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ZNF638Q14966 1978 aaKnown RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 PCLAFQ15004 111 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SNRNP35Q16560 246 aaKnown RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 FBLN7Q53RD9 439 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 C9orf57Q5W0N0 161 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PLAG1Q6DJT9 500 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ZNF585AQ6P3V2 769 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PRSS55Q6UWB4 352 aaPredicted RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 SUSD1Q6UWL2 747 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CRELD2Q6UXH1 353 aaPredicted RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 MED25Q71SY5 747 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 C12orf56Q8IXR9 622 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SLC15A4Q8N697 577 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CSGALNACT2Q8N6G5 542 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 ZNF461Q8TAF7 563 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SCFD1Q8WVM8 642 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SUSD6Q92537 303 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SMG7Q92540 1137 aaKnown RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 SMARCE1Q969G3 411 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 GRAMD1AQ96CP6 724 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 RPGRIP1Q96KN7 1286 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 B3GALT6Q96L58 329 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SENP8Q96LD8 212 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CFAP57Q96MR6 1250 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 AGAP2Q99490 1192 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 MNTQ99583 582 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PIP5K1AQ99755 562 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 TSG101Q99816 390 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CLSTN3Q9BQT9 956 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CBWD1Q9BRT8 395 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 S1PR5Q9H228 398 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 CXCL16Q9H2A7 254 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 PDE11AQ9HCR9 933 aa6.12□□□□□ -1.43
VPS53-212ENST00000572259 SEMA4BQ9NPR2 832 aaPredicted RBP6.12□□□□□ -1.43
VPS53-212ENST00000572259 AGPAT3Q9NRZ7 376 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms