RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CNOT6Q9ULM6 557 aaKnown RBP10.71□□□□□ -0.69
CLK3-226ENST00000569406 KCNH4Q9UQ05 1017 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 HSPE1-MOB4S4R3N1 261 aa10.71□□□□□ -0.69
CLK3-226ENST00000569406 SCN1AP35498 2009 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 A0A1W2PRQ8 180 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 MEIOCA2RUB1 952 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 HACD1B0YJ81 288 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 ZNF487B1APH4 448 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 PTGES3LE9PB15 166 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 PSIP1O75475 530 aaKnown RBP10.71□□□□□ -0.7
CLK3-226ENST00000569406 FLI1Q01543 452 aaPredicted RBP10.71□□□□□ -0.7
CLK3-226ENST00000569406 CTF1Q16619 201 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 MAJINQ3KP22 176 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 ZIK1Q3SY52 487 aaPredicted RBP10.71□□□□□ -0.7
CLK3-226ENST00000569406 PARP15Q460N3 678 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 PLCZ1Q86YW0 608 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 COLGALT2Q8IYK4 626 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 PPM1NQ8N819 430 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 C3orf58Q8NDZ4 430 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 GPR156Q8NFN8 814 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 OR13J1Q8NGT2 312 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 MAGEE2Q8TD90 523 aaPredicted RBP10.71□□□□□ -0.7
CLK3-226ENST00000569406 ASZ1Q8WWH4 475 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 CNDP1Q96KN2 507 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 RHBGQ9H310 441 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 IPO11Q9UI26 975 aaKnown RBP10.71□□□□□ -0.7
CLK3-226ENST00000569406 FBXO5Q9UKT4 447 aa10.71□□□□□ -0.7
CLK3-226ENST00000569406 HEATR9A2RTY3 570 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SMLR1H3BR10 107 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 HUS1O60921 280 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CLCN4P51793 760 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 NKX3-2P78367 333 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 MBTD1Q05BQ5 628 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 HIF1AQ16665 826 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CDKL4Q5MAI5 379 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CREB3L2Q70SY1 520 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ZBTB33Q86T24 672 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 PNPT1Q8TCS8 783 aaKnown RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 DCAKDQ8WVC6 231 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ATOH1Q92858 354 aaPredicted RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 FKBP10Q96AY3 582 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 RPRD1AQ96P16 312 aaPredicted RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 NELL2Q99435 816 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ZFP14Q9HCL3 533 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CISHQ9NSE2 258 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ENTPD4Q9Y227 616 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 PCDHGB1Q9Y5G3 927 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CDY2AQ9Y6F7 541 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 GRXCR2A6NFK2 248 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 NEMP1O14524 444 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 EDN3P14138 238 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 RECQLP46063 649 aaPredicted RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 RPP30P78346 268 aaKnown RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 KIF19Q2TAC6 998 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SLC36A3Q495N2 470 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SETMARQ53H47 684 aaPredicted RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 RTL10Q7L3V2 364 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 HDDC2Q7Z4H3 204 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 RNF135Q8IUD6 432 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 FBXO16Q8IX29 292 aaPredicted RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 RHOT1Q8IXI2 618 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 TIGD4Q8IY51 512 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 BEST2Q8NFU1 509 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SLC7A6Q92536 515 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ZBTB18Q99592 522 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 WDR83Q9BRX9 315 aaKnown RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 ZNF518BQ9C0D4 1074 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 KATNBL1Q9H079 304 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SYNDIG1Q9H7V2 258 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ELP3Q9H9T3 547 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 RDH8Q9NYR8 311 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 H0Y626 953 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 GPR25O00155 361 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 FAM155BO75949 473 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 MICAL2O94851 1124 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 WEE2P0C1S8 567 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 G0S2P27469 103 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 IL1R2P27930 398 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CTNNB1P35222 781 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 KCNC1P48547 511 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 ABATP80404 500 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SWI5Q1ZZU3 235 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 TEX44Q53QW1 395 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 DNAJC24Q6P3W2 148 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 PLPPR4Q7Z2D5 763 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 CCDC116Q8IYX3 515 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 PCDH20Q8N6Y1 951 aaKnown RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 ZNF680Q8NEM1 530 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 TMEM68Q96MH6 324 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 SLITRK1Q96PX8 696 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 C1QTNF6Q9BXI9 259 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 TTYH1Q9H313 450 aaPredicted RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 VPS9D1Q9Y2B5 631 aa10.7□□□□□ -0.7
CLK3-226ENST00000569406 PDCD11Q14690 1871 aaKnown RBP10.7□□□□□ -0.7
CLK3-226ENST00000569406 OAZ2O95190 189 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 LCKP06239 509 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ADORA3P0DMS8 318 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 RALBP11234 206 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 PSMA3P25788 255 aa10.69□□□□□ -0.7
CLK3-226ENST00000569406 ADORA2AP29274 412 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms