RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 AVL9Q8NBF6 648 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 LSM14AQ8ND56 463 aaKnown RBP14.74□□□□□ -0.05
VPS39-210ENST00000568357 OR13J1Q8NGT2 312 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 OR2L2Q8NH16 312 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 NCSTNQ92542 709 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 TMEM159Q96B96 161 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 LINC00615Q96LM1 132 aaPredicted RBP14.74□□□□□ -0.05
VPS39-210ENST00000568357 RANBP9Q96S59 729 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 CMKLR1Q99788 373 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 UCK1Q9HA47 277 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 ZDHHC3Q9NYG2 299 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 OGFRQ9NZT2 677 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 PISDQ9UG56 409 aa14.74□□□□□ -0.05
VPS39-210ENST00000568357 HEATR9A2RTY3 570 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 DUX1O43812 170 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 GAS8O95995 478 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 JMJD7P0C870 316 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 RALBP11234 206 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 MSNP26038 577 aaKnown RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 SLC5A2P31639 672 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 MLLT3P42568 568 aaPredicted RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 PPM1FP49593 454 aaPredicted RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 PCBP4P57723 403 aaKnown RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 BASP1P80723 227 aaKnown RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 DBN1Q16643 649 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 TSTD2Q5T7W7 516 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 C4orf22Q6V702 233 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 LRRC69Q6ZNQ3 347 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 TRIM48Q8IWZ4 208 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 SPACA3Q8IXA5 215 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 CFAP206Q8IYR0 622 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 LILRA3Q8N6C8 439 aaPredicted RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 CLDN19Q8N6F1 224 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 ZNF248Q8NDW4 579 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 HEXDCQ8WVB3 486 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 ANP32BQ92688 251 aaKnown RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 HDAC10Q969S8 669 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 MAGOHBQ96A72 148 aaKnown RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 OSBPL9Q96SU4 736 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 INSM2Q96T92 566 aaPredicted RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 DPYSL5Q9BPU6 564 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 EIF2B3Q9NR50 452 aaKnown RBP14.73□□□□□ -0.05
VPS39-210ENST00000568357 FAM8A1Q9UBU6 413 aa14.73□□□□□ -0.05
VPS39-210ENST00000568357 UNC13CQ8NB66 2214 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 TCRBV7S3A2A0A539 114 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 LILRA5A6NI73 299 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 A8MU76 341 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 CFAP99D6REC4 459 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 HGSO14964 777 aaPredicted RBP14.72□□□□□ -0.05
VPS39-210ENST00000568357 ZNF185O15231 689 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 KIF5CO60282 957 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 POLBP06746 335 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 FGF3P11487 239 aaPredicted RBP14.72□□□□□ -0.05
VPS39-210ENST00000568357 TYRP1P17643 537 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 FOXN2P32314 431 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 HALP42357 657 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 PRLHRP49683 370 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 SESN2P58004 480 aaPredicted RBP14.72□□□□□ -0.05
VPS39-210ENST00000568357 ACVR1Q04771 509 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 TRA2AQ13595 282 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS39-210ENST00000568357 GPR18Q14330 331 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 CYP1B1Q16678 543 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 SNAP47Q5SQN1 464 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 SPDYE1Q8NFV5 336 aaPredicted RBP14.72□□□□□ -0.05
VPS39-210ENST00000568357 ACTRT1Q8TDG2 376 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 USP7Q93009 1102 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 CXorf40BQ96DE9 158 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 WWP1Q9H0M0 922 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 CHRAC1Q9NRG0 131 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 POT1Q9NUX5 634 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 ACSL5Q9ULC5 683 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 RIMKLBQ9ULI2 386 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 SNX12Q9UMY4 172 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 TCAF1Q9Y4C2 921 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 PCDHGA7Q9Y5G6 932 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 CFAP20Q9Y6A4 193 aaKnown RBP14.72□□□□□ -0.05
VPS39-210ENST00000568357 PRSS21Q9Y6M0 314 aa14.72□□□□□ -0.05
VPS39-210ENST00000568357 NVLO15381 856 aaKnown RBP14.71□□□□□ -0.05
VPS39-210ENST00000568357 UBXN7O94888 489 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 GOT2P00505 430 aaKnown RBP14.71□□□□□ -0.05
VPS39-210ENST00000568357 KRT14P02533 472 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 COILP38432 576 aaPredicted RBP14.71□□□□□ -0.05
VPS39-210ENST00000568357 VPS41P49754 854 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 MAPK10P53779 464 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 TERF1P54274 439 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 CRADDP78560 199 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 TLE3Q04726 772 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 LAMB3Q13751 1172 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 ZNF658BQ4V348 819 aaPredicted RBP14.71□□□□□ -0.05
VPS39-210ENST00000568357 PCID2Q5JVF3 399 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 ZNF534Q76KX8 674 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 ARHGAP22Q7Z5H3 698 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 JAMLQ86YT9 394 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 AGBL5Q8NDL9 886 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 GPR150Q8NGU9 434 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 KCNE4Q8WWG9 221 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 CCM2Q9BSQ5 444 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 ZMYND15Q9H091 742 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 EPB41L1Q9H4G0 881 aa14.71□□□□□ -0.05
VPS39-210ENST00000568357 OCIAD1Q9NX40 245 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms