RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 SLC9B2Q86UD5 537 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 Q8N9G6 341 aaPredicted RBP13.22□□□□□ -0.29
CLK3-218ENST00000566926 DDHD1Q8NEL9 900 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 PPHLN1Q8NEY8 458 aaKnown RBP13.22□□□□□ -0.29
CLK3-218ENST00000566926 OR52K1Q8NGK4 314 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 GSDMBQ8TAX9 411 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 MDM1Q8TC05 714 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 HEXDCQ8WVB3 486 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 SH3KBP1Q96B97 665 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 ULK4Q96C45 1275 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 ZNF514Q96K75 400 aaPredicted RBP13.22□□□□□ -0.29
CLK3-218ENST00000566926 CYTH2Q99418 400 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 SH3GL2Q99962 352 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 STRADBQ9C0K7 418 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 ASB8Q9H765 288 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 VPS37BQ9H9H4 285 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 CHMP2BQ9UQN3 213 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 KCNK6Q9Y257 313 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 PRKAB1Q9Y478 270 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 ST14Q9Y5Y6 855 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 NFS1Q9Y697 457 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 DNMT3AQ9Y6K1 912 aaPredicted RBP13.22□□□□□ -0.29
CLK3-218ENST00000566926 USP24Q9UPU5 2620 aa13.22□□□□□ -0.29
CLK3-218ENST00000566926 HEATR9A2RTY3 570 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 KLHL33A6NCF5 533 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 D6RAR5 112 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 GOLGA8KD6RF30 607 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A9O60656 530 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 MTX2O75431 263 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 SRP72O76094 671 aaKnown RBP13.21□□□□□ -0.29
CLK3-218ENST00000566926 USP1O94782 785 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 PRAMEF1O95521 474 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 RALBP11234 206 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 F3P13726 295 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 PAMP19021 973 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A6P19224 532 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 MSH3P20585 1137 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 ITGALP20701 1170 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A1P22309 533 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A4P22310 534 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 AKT1P31749 480 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A3P35503 534 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A5P35504 534 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 GRIA1P42261 906 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 LSSP48449 732 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 ZNF844Q08AG5 666 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 MSLNQ13421 630 aaPredicted RBP13.21□□□□□ -0.29
CLK3-218ENST00000566926 NAB1Q13506 487 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 OLIG2Q13516 323 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 FASTKD3Q14CZ7 662 aaKnown RBP13.21□□□□□ -0.29
CLK3-218ENST00000566926 PCID2Q5JVF3 399 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 CEP85LQ5SZL2 805 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 ZNF648Q5T619 568 aaPredicted RBP13.21□□□□□ -0.29
CLK3-218ENST00000566926 IYDQ6PHW0 289 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 CRTC3Q6UUV7 619 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 PIM3Q86V86 326 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 TRAPPC5Q8IUR0 188 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 ANKMY2Q8IV38 441 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 SFRP1Q8N474 314 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 GABPB2Q8TAK5 448 aaPredicted RBP13.21□□□□□ -0.29
CLK3-218ENST00000566926 STYXQ8WUJ0 223 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 CDKL2Q92772 493 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 RANBP9Q96S59 729 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 DPYSL5Q9BPU6 564 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.21□□□□□ -0.29
CLK3-218ENST00000566926 OSGEPL1Q9H4B0 414 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 ACSS3Q9H6R3 686 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 POLR1BQ9H9Y6 1135 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A7Q9HAW7 530 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A10Q9HAW8 530 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 UGT1A8Q9HAW9 530 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 KLC4Q9NSK0 619 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 TBC1D29Q9UFV1 150 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 SLC24A2Q9UI40 661 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 FKBPLQ9UIM3 349 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 SOX13Q9UN79 622 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 PCDHB1Q9Y5F3 818 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 ENTPD2Q9Y5L3 495 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 SLC30A1Q9Y6M5 507 aa13.21□□□□□ -0.29
CLK3-218ENST00000566926 CCDC187A0A096LP49 1063 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 EXOC1LA0A1B0GW35 172 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 A0A1W2PQM1 296 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 CFAP99D6REC4 459 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 RASGRF2O14827 1237 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 LDB2O43679 373 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 SNX2O60749 519 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 CDH16O75309 829 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 CPNE6O95741 557 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 IDSP22304 550 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 ADRA1DP25100 572 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 MGAT1P26572 445 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 ALDH4A1P30038 563 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 MLLT3P42568 568 aaPredicted RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 ZNF140P52738 457 aaPredicted RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 INHBCP55103 352 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 GPLD1P80108 840 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 B4GALNT1Q00973 533 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 HHEXQ03014 270 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 ILF2Q12905 390 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms