RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 KLHL33A6NCF5 533 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 AGAP14A8MT82 685 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 RAD1O60671 282 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 C1QL1O75973 258 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 POLBP06746 335 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 ANKRD34CP0C6C1 535 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 MC4RP32245 332 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 FOXM1Q08050 763 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 SEPT6Q14141 434 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 POU6F1Q14863 301 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 ZRANB3Q5FWF4 1079 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 CACHD1Q5VU97 1274 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 IRGCQ6NXR0 463 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 TAS2R42Q7RTR8 314 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 CFAP206Q8IYR0 622 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 NXPE1Q8N323 547 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 HEXDCQ8WVB3 486 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 RSC1A1Q92681 617 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 DNAJC1Q96KC8 554 aaKnown RBP20.3■□□□□ 0.84
CLN3-219ENST00000565778 WWP1Q9H0M0 922 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 PIH1D1Q9NWS0 290 aaKnown RBP20.3■□□□□ 0.84
CLN3-219ENST00000565778 PILRAQ9UKJ1 303 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 PCDHGA4Q9Y5G9 962 aa20.3■□□□□ 0.84
CLN3-219ENST00000565778 CFAP20Q9Y6A4 193 aaKnown RBP20.3■□□□□ 0.84
CLN3-219ENST00000565778 ATRXP46100 2492 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 CFAP99D6REC4 459 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 TOX3O15405 576 aaPredicted RBP20.29■□□□□ 0.84
CLN3-219ENST00000565778 KIF1CO43896 1103 aaKnown RBP20.29■□□□□ 0.84
CLN3-219ENST00000565778 AP2A1O95782 977 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 ATP1B2P14415 290 aaPredicted RBP20.29■□□□□ 0.84
CLN3-219ENST00000565778 WT1P19544 449 aaPredicted RBP20.29■□□□□ 0.84
CLN3-219ENST00000565778 GSE1Q14687 1217 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 PLCL1Q15111 1095 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 GPR33Q49SQ1 333 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 BCL7AQ4VC05 210 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 KLHL35Q6PF15 583 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 FAM92BQ6ZTR7 304 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 LINC00523Q86TU6 105 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 ZNF843Q8N446 348 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 GPR150Q8NGU9 434 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 C12orf66Q96MD2 445 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 INSM2Q96T92 566 aaPredicted RBP20.29■□□□□ 0.84
CLN3-219ENST00000565778 ARHGAP9Q9BRR9 750 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 NLE1Q9NVX2 485 aaPredicted RBP20.29■□□□□ 0.84
CLN3-219ENST00000565778 ZNF148Q9UQR1 794 aa20.29■□□□□ 0.84
CLN3-219ENST00000565778 ARHGAP6O43182 974 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 LIASO43766 372 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 IFNB1P01574 187 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 MTHFD1P11586 935 aaKnown RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 MAP4P27816 1152 aaKnown RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 CAPZBP47756 277 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 LMAN1P49257 510 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 CDKN1CP49918 316 aaPredicted RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 CYP4F2P78329 520 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 KRT33BQ14525 404 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 RPS6KA1Q15418 735 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 SLC13A5Q86YT5 568 aaPredicted RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 NLGN4XQ8N0W4 816 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 DNAAF3Q8N9W5 541 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 NLGN4YQ8NFZ3 816 aaPredicted RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 STYXQ8WUJ0 223 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 C1orf54Q8WWF1 131 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 CDKN2AIPNLQ96HQ2 116 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 LINC00615Q96LM1 132 aaPredicted RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 FRMD8P1Q9BZ68 369 aaPredicted RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 SPRY4Q9C004 299 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 RAB33BQ9H082 229 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 ZNF768Q9H5H4 540 aaKnown RBP20.28■□□□□ 0.84
CLN3-219ENST00000565778 ZDHHC3Q9NYG2 299 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 EPHA6Q9UF33 1036 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 AHCTF1Q8WYP5 2266 aa20.28■□□□□ 0.84
CLN3-219ENST00000565778 SGTAO43765 313 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 STK17BO94768 372 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 GAS8O95995 478 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 SLC35G4P0C7Q5 338 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 LIFP15018 202 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 SNX1Q13596 522 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 MEI1Q5TIA1 1274 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 SERPINA9Q86WD7 417 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 SPDYE1Q8NFV5 336 aaPredicted RBP20.27■□□□□ 0.84
CLN3-219ENST00000565778 EXTL1Q92935 676 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 OR6C1Q96RD1 312 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 CCM2Q9BSQ5 444 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 ETNK1Q9HBU6 452 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 LZTFL1Q9NQ48 299 aa20.27■□□□□ 0.84
CLN3-219ENST00000565778 CCDC78A2IDD5 438 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 E7EVH7 732 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 H7C0S8 307 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 SH3BP2P78314 561 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 SKIDA1Q1XH10 827 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 TIPARPQ7Z3E1 657 aaKnown RBP20.26■□□□□ 0.83
CLN3-219ENST00000565778 PRSS42Q7Z5A4 293 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 ZNF605Q86T29 641 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 OR52K1Q8NGK4 314 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 ZFPM2Q8WW38 1151 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 KLHL6Q8WZ60 621 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 KIAA1143Q96AT1 154 aaPredicted RBP20.26■□□□□ 0.83
CLN3-219ENST00000565778 MED8Q96G25 268 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 ELMO2Q96JJ3 720 aa20.26■□□□□ 0.83
CLN3-219ENST00000565778 SEMA4CQ9C0C4 833 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms