RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PRSS56P0CW18 603 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 TPH1P17752 444 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 MSH3P20585 1137 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 PPP1CAP62136 330 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 TMPRSS15P98073 1019 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 SIX1Q15475 284 aaPredicted RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 TAF1BQ53T94 588 aaPredicted RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 CAPRIN2Q6IMN6 1127 aaKnown RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 ZNF662Q6ZS27 426 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 DET1Q7L5Y6 550 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 PRSS42Q7Z5A4 293 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 SNX20Q7Z614 316 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 TRIM48Q8IWZ4 208 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 LILRA3Q8N6C8 439 aaPredicted RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 SPDYE1Q8NFV5 336 aaPredicted RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 ATG4AQ8WYN0 398 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 CXorf40BQ96DE9 158 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 DNAJC1Q96KC8 554 aaKnown RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 TGM7Q96PF1 710 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 ZPBPQ9BS86 351 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 FAM96AQ9H5X1 160 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 LRRC40Q9H9A6 602 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 NLE1Q9NVX2 485 aaPredicted RBP14.55□□□□□ -0.08
CLN3-213ENST00000565047 PSMD13Q9UNM6 376 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 BOD1L1Q8NFC6 3051 aa14.55□□□□□ -0.08
CLN3-213ENST00000565047 KLHL33A6NCF5 533 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 GOLGA6L3A6NEY3 463 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 RAD1O60671 282 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 MTHFD1P11586 935 aaKnown RBP14.54□□□□□ -0.08
CLN3-213ENST00000565047 LIFP15018 202 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 AMD1P17707 334 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 AKT1P31749 480 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 STIP1P31948 543 aaKnown RBP14.54□□□□□ -0.08
CLN3-213ENST00000565047 HADHAP40939 763 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 HALP42357 657 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 PRLHRP49683 370 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 SH3BP2P78314 561 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 CYP4F2P78329 520 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 P3H1Q32P28 736 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 MEI1Q5TIA1 1274 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 CEACAM20Q6UY09 585 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 ARHGEF18Q6ZSZ5 1173 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 SLC13A5Q86YT5 568 aaPredicted RBP14.54□□□□□ -0.08
CLN3-213ENST00000565047 PIANPQ8IYJ0 282 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 CACNA2D3Q8IZS8 1091 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 UBE2Q2Q8WVN8 375 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 ZFPM2Q8WW38 1151 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 MED8Q96G25 268 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 CDKN2AIPNLQ96HQ2 116 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 SLC41A2Q96JW4 573 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 WWP1Q9H0M0 922 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 ACSL5Q9ULC5 683 aa14.54□□□□□ -0.08
CLN3-213ENST00000565047 GCN1Q92616 2671 aaKnown RBP14.54□□□□□ -0.08
CLN3-213ENST00000565047 IGHV5-51A0A0C4DH38 117 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 LOC101059948A0A1B0GTJ6 334 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 C17orf113A0A1B0GUU1 675 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 TERTO14746 1132 aaKnown RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 POLR1CO15160 346 aaPredicted RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 STK17BO94768 372 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 SUN1O94901 812 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 FGF5P12034 268 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 ATP1B2P14415 290 aaPredicted RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 ZNF28P17035 718 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 ITGB6P18564 788 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 MC4RP32245 332 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 TBR1Q16650 682 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 GPR33Q49SQ1 333 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 NLGN4XQ8N0W4 816 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 NLGN4YQ8NFZ3 816 aaPredicted RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 EXTL1Q92935 676 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 ULK4Q96C45 1275 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 ZDHHC12Q96GR4 267 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 RMDN2Q96LZ7 410 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 COPS8Q99627 209 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 FRMD8P1Q9BZ68 369 aaPredicted RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 PIH1D1Q9NWS0 290 aaKnown RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 ZDHHC3Q9NYG2 299 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 CRLS1Q9UJA2 301 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 GUCA1BQ9UMX6 200 aa14.53□□□□□ -0.08
CLN3-213ENST00000565047 CFAP20Q9Y6A4 193 aaKnown RBP14.53□□□□□ -0.08
CLN3-213ENST00000565047 PIEZO2Q9H5I5 2752 aa14.52□□□□□ -0.08
CLN3-213ENST00000565047 ZNF462Q96JM2 2506 aa14.52□□□□□ -0.08
CLN3-213ENST00000565047 PSMD3O43242 534 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 NELFEP18615 380 aaKnown RBP14.52□□□□□ -0.09
CLN3-213ENST00000565047 ITGALP20701 1170 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 ACRV1P26436 265 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 MAP4P27816 1152 aaKnown RBP14.52□□□□□ -0.09
CLN3-213ENST00000565047 PBLDP30039 288 aaPredicted RBP14.52□□□□□ -0.09
CLN3-213ENST00000565047 GRIA1P42261 906 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 ATP1A2P50993 1020 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 GSDMDP57764 484 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 MAP7Q14244 749 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 IL11RAQ14626 422 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 POU6F1Q14863 301 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 DUS1LQ6P1R4 473 aaKnown RBP14.52□□□□□ -0.09
CLN3-213ENST00000565047 FAM92BQ6ZTR7 304 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 PRUNE1Q86TP1 453 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 SERPINA9Q86WD7 417 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 GLIS1Q8NBF1 620 aa14.52□□□□□ -0.09
CLN3-213ENST00000565047 OR13J1Q8NGT2 312 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms