RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 NSG1P42857 185 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 PREPP48147 710 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 CSE1LP55060 971 aaKnown RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 DMPKQ09013 629 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 ILF3Q12906 894 aaKnown RBP eCLIP9.61□□□□□ -0.87
CLK3-208ENST00000562626 CLCA4Q14CN2 919 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 KYNUQ16719 465 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 PERM1Q5SV97 790 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 RBM20Q5T481 1227 aaKnown RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 GUSBP11Q6P575 273 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 OGFOD3Q6PK18 319 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 SLCO6A1Q86UG4 719 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 C17orf82Q86X59 251 aaPredicted RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 ZNF761Q86XN6 746 aaPredicted RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 GKN2Q86XP6 184 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 VRK3Q8IV63 474 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 C2CD4AQ8NCU7 369 aaPredicted RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 GPR156Q8NFN8 814 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 SPDYE1Q8NFV5 336 aaPredicted RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 SLC37A2Q8TED4 501 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 ZDHHC1Q8WTX9 485 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 PYROXD1Q8WU10 500 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 DCUN1D1Q96GG9 259 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 LINC00615Q96LM1 132 aaPredicted RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 RMDN2Q96LZ7 410 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 TTC25Q96NG3 672 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 NAT9Q9BTE0 207 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 TXLNGYQ9BZA5 131 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 ZCCHC2Q9C0B9 1178 aaKnown RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 PHACTR1Q9C0D0 580 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 EPB41L4BQ9H329 900 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 CDC42EP4Q9H3Q1 356 aaKnown RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 OSGEPL1Q9H4B0 414 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 COG4Q9H9E3 785 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 ZNF624Q9P2J8 865 aaPredicted RBP9.61□□□□□ -0.87
CLK3-208ENST00000562626 FBXO5Q9UKT4 447 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 PSMD13Q9UNM6 376 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 CDYLQ9Y232 598 aa9.61□□□□□ -0.87
CLK3-208ENST00000562626 MGAT4DA6NG13 374 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 OR52A4PA6NMU1 304 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 CFAP99D6REC4 459 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 PRMT5O14744 637 aaPredicted RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 NDC80O14777 642 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 NDUFS3O75489 264 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 FAM155BO75949 473 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 KCNK5O95279 499 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 AHSGP02765 367 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 CSRP1P21291 193 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 RPS3P23396 243 aaKnown RBP eCLIP9.6□□□□□ -0.87
CLK3-208ENST00000562626 CCR7P32248 378 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 LEPRP48357 1165 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 TTPAP49638 278 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 ACADVLP49748 655 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 NOVA1P51513 510 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 CLCNKAP51800 687 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 VSNL1P62760 191 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 CUL1Q13616 776 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 THOC5Q13769 683 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 LRP8Q14114 963 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 PUM1Q14671 1186 aaKnown RBP eCLIP9.6□□□□□ -0.87
CLK3-208ENST00000562626 BRD3Q15059 726 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 ERCC6LQ2NKX8 1250 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 MRNIPQ6NTE8 343 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 ZCCHC8Q6NZY4 707 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 CERS6Q6ZMG9 384 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 AMZ2Q86W34 360 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 IFT20Q8IY31 132 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 CFAP206Q8IYR0 622 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 PIAS4Q8N2W9 510 aaPredicted RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 ARL14Q8N4G2 192 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 FAM181AQ8N9Y4 354 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 OR2L2Q8NH16 312 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 GIMAP7Q8NHV1 300 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.6□□□□□ -0.87
CLK3-208ENST00000562626 FMO2Q99518 471 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 NDNQ99608 321 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 CCM2Q9BSQ5 444 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 MCMBPQ9BTE3 642 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 FOXP3Q9BZS1 431 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 WWP1Q9H0M0 922 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 OR52A5Q9H2C5 316 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 DPEP2Q9H4A9 486 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 FTSJ1Q9UET6 329 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 DOLKQ9UPQ8 538 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 CFAP20Q9Y6A4 193 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 RNF215Q9Y6U7 377 aa9.6□□□□□ -0.87
CLK3-208ENST00000562626 SETXQ7Z333 2677 aaKnown RBP9.6□□□□□ -0.87
CLK3-208ENST00000562626 AKAP13Q12802 2813 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 SLC5A10A0PJK1 596 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 KRT87PA6NCN2 255 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 NEMP2A6NFY4 417 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 FAM159BA6NKW6 160 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 PPM1DO15297 605 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 AP2A2O94973 939 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 TRIM16O95361 564 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 LDOC1O95751 146 aaPredicted RBP9.59□□□□□ -0.87
CLK3-208ENST00000562626 RALBP11234 206 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 CKMT1AP12532 417 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 F3P13726 295 aa9.59□□□□□ -0.87
CLK3-208ENST00000562626 AOAHP28039 575 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms