RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 JUPP14923 745 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 HALP42357 657 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 ARL4CP56559 192 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 CCL7P80098 99 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 CALCOCO2Q13137 446 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 SPIDRQ14159 915 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 CLCA4Q14CN2 919 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 HIF1AQ16665 826 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 BBS9Q3SYG4 887 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 RNF187Q5TA31 235 aaPredicted RBP16.39■□□□□ 0.21
CLK3-207ENST00000562389 CCNI2Q6ZMN8 369 aaPredicted RBP16.39■□□□□ 0.21
CLK3-207ENST00000562389 SDCCAG8Q86SQ7 713 aaPredicted RBP16.39■□□□□ 0.21
CLK3-207ENST00000562389 OTUD6BQ8N6M0 293 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 Q8N9G6 341 aaPredicted RBP16.39■□□□□ 0.21
CLK3-207ENST00000562389 MNS1Q8NEH6 495 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 SH3KBP1Q96B97 665 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 LRRC39Q96DD0 335 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 DEPDC7Q96QD5 511 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 TCF12Q99081 682 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 DPH5Q9H2P9 285 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 COG4Q9H9E3 785 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 POT1Q9NUX5 634 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 ZNF624Q9P2J8 865 aaPredicted RBP16.39■□□□□ 0.21
CLK3-207ENST00000562389 FAM169AQ9Y6X4 670 aa16.39■□□□□ 0.21
CLK3-207ENST00000562389 GOLGA8KD6RF30 607 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 GOLGA8TH3BQL2 631 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 PFDN6O15212 129 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 CASC3O15234 703 aaKnown RBP16.38■□□□□ 0.21
CLK3-207ENST00000562389 RPS3P23396 243 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLK3-207ENST00000562389 SLC19A1P41440 591 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 OR1D5P58170 312 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 CBLBQ13191 982 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 CRYMQ14894 314 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 LONRF1Q17RB8 773 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 NEPROQ6NW34 567 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 C8orf74Q6P047 294 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 RBM44Q6ZP01 1051 aaKnown RBP16.38■□□□□ 0.21
CLK3-207ENST00000562389 LRRC6Q86X45 466 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 CILP2Q8IUL8 1156 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 TRIM48Q8IWZ4 208 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 LMNTD2Q8IXW0 634 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 CFAP206Q8IYR0 622 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 LILRA3Q8N6C8 439 aaPredicted RBP16.38■□□□□ 0.21
CLK3-207ENST00000562389 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLK3-207ENST00000562389 PWWP2AQ96N64 755 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 GFM1Q96RP9 751 aaKnown RBP16.38■□□□□ 0.21
CLK3-207ENST00000562389 SLC38A3Q99624 504 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.38■□□□□ 0.21
CLK3-207ENST00000562389 P2RY12Q9H244 342 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 UCK1Q9HA47 277 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 GRHL1Q9NZI5 618 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 IL1RAPL1Q9NZN1 696 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 FAM8A1Q9UBU6 413 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 UNC13CQ8NB66 2214 aa16.38■□□□□ 0.21
CLK3-207ENST00000562389 FAM149AA5PLN7 773 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 LILRA5A6NI73 299 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 OR52A4PA6NMU1 304 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 D6RAR5 112 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 E7ESA3 106 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 LIN7AO14910 233 aaPredicted RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 B4GAT1O43505 415 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 NDUFS3O75489 264 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 VIPP01282 170 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 ALDH4A1P30038 563 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 ELK3P41970 407 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 EPHA4P54764 986 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 ADARP55265 1226 aaKnown RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 GPLD1P80108 840 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 TARDBPQ13148 414 aaKnown RBP eCLIP16.37■□□□□ 0.21
CLK3-207ENST00000562389 RPA4Q13156 261 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 THOC5Q13769 683 aaKnown RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 RPE65Q16518 533 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 CLPPQ16740 277 aaPredicted RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 SPANXN3Q5MJ09 141 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 IGDCC3Q8IVU1 814 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 RBM12BQ8IXT5 1001 aaKnown RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 MMGT1Q8N4V1 131 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 CALML6Q8TD86 181 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 CXorf40BQ96DE9 158 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 WDR83Q9BRX9 315 aaKnown RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 CARD6Q9BX69 1037 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 TSSK1BQ9BXA7 367 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 WWP1Q9H0M0 922 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 SYNDIG1Q9H7V2 258 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 C20orf96Q9NUD7 363 aaPredicted RBP16.37■□□□□ 0.21
CLK3-207ENST00000562389 KCNK4Q9NYG8 393 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 GNPTGQ9UJJ9 305 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 PSMD13Q9UNM6 376 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 VPS9D1Q9Y2B5 631 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 TEX264Q9Y6I9 313 aa16.37■□□□□ 0.21
CLK3-207ENST00000562389 NCOR2Q9Y618 2525 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 IGHV1OR21-1A0A087WYE8 117 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 CTAGE15A4D2H0 777 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 CSO75390 466 aaKnown RBP16.36■□□□□ 0.21
CLK3-207ENST00000562389 SLC35G4P0C7Q5 338 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 CTAGE8P0CG41 777 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 MTHFD1P11586 935 aaKnown RBP16.36■□□□□ 0.21
CLK3-207ENST00000562389 PDX1P52945 283 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 SQSTM1Q13501 440 aa16.36■□□□□ 0.21
CLK3-207ENST00000562389 STEAP4Q687X5 459 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms