RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ADGRG6Q86SQ4 1221 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 FLCNQ8NFG4 579 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 SKA2Q8WVK7 121 aaPredicted RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 CD93Q9NPY3 652 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 PRDM6Q9NQX0 595 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 LRRK1Q38SD2 2015 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 CCDC189A1A4V9 331 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 KIAA0754O94854 1291 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 CBSLP0DN79 551 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 CBSP35520 551 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 CRY1Q16526 586 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 PPP1R3AQ16821 1122 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 TTC31Q49AM3 519 aaPredicted RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 MTDHQ86UE4 582 aaKnown RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 DLG3Q92796 817 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 ESAMQ96AP7 390 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 FAM131CQ96AQ9 280 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 NSUN5Q96P11 429 aaKnown RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 LRRC37BQ96QE4 947 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 FAM126AQ9BYI3 521 aaPredicted RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 MBNL1Q9NR56 388 aaKnown RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 ATXN10Q9UBB4 475 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 MMP17Q9ULZ9 603 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 A0A1W2PQU0 124 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 TCRBV21S2A2A0A5A6 115 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 ZNF195O14628 629 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 KLK8O60259 260 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 ATG13O75143 517 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 NDUFV2P19404 249 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 SERPINB3P29508 390 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 PRLHRP49683 370 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 RPS21P63220 83 aaKnown RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 PHKG1Q16816 387 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 ALYREFQ86V81 257 aaKnown RBP20.9■□□□□ 0.94
CLN3-209ENST00000561689 HIC2Q96JB3 615 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 COG4Q9H9E3 785 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 TRIM39Q9HCM9 518 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 TNFRSF12AQ9NP84 129 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 DUSP12Q9UNI6 340 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 TMEM98Q9Y2Y6 226 aa20.9■□□□□ 0.94
CLN3-209ENST00000561689 PIKFYVEQ9Y2I7 2098 aa20.89■□□□□ 0.94
CLN3-209ENST00000561689 TBC1D3DA0A087WVF3 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3IA0A087WXS9 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3EA0A087X179 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3KA0A087X1G2 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3FA6NER0 549 aaPredicted RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 TMEM233B4DJY2 109 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3LB9A6J9 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 QSOX1O00391 747 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 UBFD1O14562 309 aaKnown RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 DCTN3O75935 186 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 GUCA1CO95843 209 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3HP0C7X1 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 ACADMP11310 421 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 ENO3P13929 434 aaPredicted RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 PBLDP30039 288 aaPredicted RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 ALDH18A1P54886 795 aaKnown RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 GBX1Q14549 363 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 SETDB1Q15047 1291 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 SPRED3Q2MJR0 410 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 SH2D4BQ5SQS7 431 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 PLEKHS1Q5SXH7 462 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3GQ6DHY5 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3CQ6IPX1 549 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 ZNF852Q6ZMS4 543 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 HEATR4Q86WZ0 1026 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 TBC1D3Q8IZP1 549 aaPredicted RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 ERP27Q96DN0 273 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 SIKE1Q9BRV8 207 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 CCM2Q9BSQ5 444 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 ZCCHC2Q9C0B9 1178 aaKnown RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 WWP1Q9H0M0 922 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 EML4Q9HC35 981 aaKnown RBP20.89■□□□□ 0.93
CLN3-209ENST00000561689 HAO1Q9UJM8 370 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 SCML1Q9UN30 329 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 CDYLQ9Y232 598 aa20.89■□□□□ 0.93
CLN3-209ENST00000561689 PPP6CO00743 305 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 MAN2B1O00754 1011 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 KPNA5O15131 536 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 FFAR2O15552 330 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 RNGTTO60942 597 aaKnown RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 ALOX15P16050 662 aaPredicted RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 MAT2AP31153 395 aaKnown RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 ZBTB16Q05516 673 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 SGCGQ13326 291 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 C18orf21Q32NC0 220 aaPredicted RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 GPR153Q6NV75 609 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 ADAMTSL4Q6UY14 1074 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 CUZD1Q86UP6 607 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 TRAPPC5Q8IUR0 188 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 LILRA3Q8N6C8 439 aaPredicted RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 ASZ1Q8WWH4 475 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 RILPQ96NA2 401 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 LGR4Q9BXB1 951 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 MYLK2Q9H1R3 596 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 NUDT4Q9NZJ9 180 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 ASB1Q9Y576 335 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 ATXN2Q99700 1313 aaKnown RBP20.88■□□□□ 0.93
CLN3-209ENST00000561689 MATN2O00339 956 aa20.88■□□□□ 0.93
CLN3-209ENST00000561689 RAD51BO15315 384 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms