RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CBSLP0DN79 551 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 ZNF8P17098 575 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 CD6P30203 668 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 CBSP35520 551 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 IGFALSP35858 605 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 KCNC1P48547 511 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 OR4D1Q15615 310 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 TSNQ15631 228 aaKnown RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 CHI3L2Q15782 390 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 BCL7AQ4VC05 210 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 PLEKHS1Q5SXH7 462 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 PIWIL4Q7Z3Z4 852 aaKnown RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 CAMKK1Q8N5S9 505 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 DENND6BQ8NEG7 585 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 RHEBL1Q8TAI7 183 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 STAG3L4Q8TBR4 150 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 ELMO1Q92556 727 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 KIAA1191Q96A73 305 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 FUBP1Q96AE4 644 aaKnown RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 ZNF514Q96K75 400 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 CCM2Q9BSQ5 444 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 TPSD1Q9BZJ3 242 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 C6orf106Q9H6K1 298 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 PHPT1Q9NRX4 125 aaPredicted RBP11.04□□□□□ -0.64
USP3-218ENST00000560202 OXSMQ9NWU1 459 aa11.04□□□□□ -0.64
USP3-218ENST00000560202 CCDC189A1A4V9 331 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 NPEPPSL1A6NEC2 478 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 CDC7O00311 574 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 BTN3A1O00481 513 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 KLF11O14901 512 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 LATO43561 262 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 DLX3O60479 287 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 LILRB5O75023 590 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 FGF3P11487 239 aaPredicted RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 MYCLP1P12525 358 aaPredicted RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 HNRNPA2B1P22626 353 aaKnown RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 CXCL12P48061 93 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 PXNP49023 591 aaPredicted RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 CCR5P51681 352 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 SIGLEC14Q08ET2 396 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 HSPA14Q0VDF9 509 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 BOP1Q14137 746 aaKnown RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 GBX1Q14549 363 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 KIAA0895LQ68EN5 471 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 DOK6Q6PKX4 331 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 C6orf89Q6UWU4 347 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 CYHR1Q6ZMK1 362 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 CCDC121Q6ZUS5 278 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 TRAPPC5Q8IUR0 188 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 LRRC34Q8IZ02 419 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 MYO1HQ8N1T3 1032 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 RAB3IL1Q8TBN0 382 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 ZNF473Q8WTR7 871 aaKnown RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 ASZ1Q8WWH4 475 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 RLN3Q8WXF3 142 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 FOXJ1Q92949 421 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 ATOH8Q96SQ7 321 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 MYOCQ99972 504 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 IER2Q9BTL4 223 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 GPR174Q9BXC1 333 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 TSR3Q9UJK0 312 aaKnown RBP11.03□□□□□ -0.64
USP3-218ENST00000560202 GPR34Q9UPC5 381 aa11.03□□□□□ -0.64
USP3-218ENST00000560202 IGHV1OR15-9A0A0B4J2B8 117 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 EIF3FO00303 357 aaPredicted RBP11.02□□□□□ -0.64
USP3-218ENST00000560202 FPGTO14772 594 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 NUAK1O60285 661 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 TRIM13O60858 407 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 KERAO60938 352 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 GPC4O75487 556 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 IGHV4-34P06331 123 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 ENO3P13929 434 aaPredicted RBP11.02□□□□□ -0.64
USP3-218ENST00000560202 ATP5F1P24539 256 aaPredicted RBP11.02□□□□□ -0.64
USP3-218ENST00000560202 LACTB2Q53H82 288 aaPredicted RBP11.02□□□□□ -0.64
USP3-218ENST00000560202 ATG16L1Q676U5 607 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 ZCCHC23Q6ZST2 131 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 ZNF547Q8IVP9 402 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 FRMD1Q8N878 549 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 PPP1R14CQ8TAE6 165 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 SREK1Q8WXA9 508 aaKnown RBP11.02□□□□□ -0.64
USP3-218ENST00000560202 EDAQ92838 391 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 LINC00615Q96LM1 132 aaPredicted RBP11.02□□□□□ -0.64
USP3-218ENST00000560202 APOOQ9BUR5 198 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 RABEP2Q9H5N1 569 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 EBF2Q9HAK2 575 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 RNF112Q9ULX5 631 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 CDYLQ9Y232 598 aa11.02□□□□□ -0.64
USP3-218ENST00000560202 POM121BA6NF01 834 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 NEMP2A6NFY4 417 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 TMEM202A6NGA9 273 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GPR89AB7ZAQ6 455 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 CACNB4O00305 520 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 PI15O43692 258 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 POP7O75817 140 aaKnown RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 PDGFBP01127 241 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 SERPINE1P05121 402 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 HOXC4P09017 264 aaPredicted RBP11.01□□□□□ -0.65
USP3-218ENST00000560202 GSTM1P09488 218 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 GPR89BP0CG08 455 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 TPBGLP0DKB5 382 aa11.01□□□□□ -0.65
USP3-218ENST00000560202 AKT2P31751 481 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms