RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NAT6Q93015 286 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CNDP2Q96KP4 475 aaKnown RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 P2RY12Q9H244 342 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 ANKZF1Q9H8Y5 726 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 COG4Q9H9E3 785 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 PLAC1Q9HBJ0 212 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 LRRC4CQ9HCJ2 640 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 FBXO6Q9NRD1 293 aaPredicted RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 FAM8A1Q9UBU6 413 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.9□□□□□ -0.82
USP3-216ENST00000559873 PCOLCE2Q9UKZ9 415 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 CRYL1Q9Y2S2 319 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 IKBKGQ9Y6K9 419 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 PRSS21Q9Y6M0 314 aa9.9□□□□□ -0.82
USP3-216ENST00000559873 V9GYY5 206 aaPredicted RBP9.9□□□□□ -0.82
USP3-216ENST00000559873 GOLGA4Q13439 2230 aaKnown RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 A0A087WUV0 522 aaPredicted RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 FAM159BA6NKW6 160 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 SIGLEC6O43699 453 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 SH3BP5O60239 455 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 VPS26AO75436 327 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 TRIM16O95361 564 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 ACSL3O95573 720 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 LDOC1O95751 146 aaPredicted RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 S1PR4O95977 384 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 CHRM3P20309 590 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 FMO4P31512 558 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 GP5P40197 560 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 PMS2P54278 862 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 CSE1LP55060 971 aaKnown RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 MPP1Q00013 466 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 SEPT7Q16181 437 aaKnown RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 KYNUQ16719 465 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 ERCC6LQ2NKX8 1250 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 MAP9Q49MG5 647 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 C14orf28Q4W4Y0 310 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 LRRC8EQ6NSJ5 796 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 FAM45BPQ6NSW5 357 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 EMBQ6PCB8 327 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 WASH2PQ6VEQ5 465 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 TAOK1Q7L7X3 1001 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 OTOAQ7RTW8 1153 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 STRA8Q7Z7C7 330 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 SLC9B2Q86UD5 537 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 NRROSQ86YC3 692 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 TRIM48Q8IWZ4 208 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 CCL4L1Q8NHW4 92 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 FAM45AQ8TCE6 357 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 FBF1Q8TES7 1133 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 KCNJ9Q92806 393 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 SH3KBP1Q96B97 665 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 APOLD1Q96LR9 279 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 CPNE1Q99829 537 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 ACSS3Q9H6R3 686 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 WASH6PQ9NQA3 447 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 SPATS2LQ9NUQ6 558 aaKnown RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 SIRPGQ9P1W8 387 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 GULP1Q9UBP9 304 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 TRMT6Q9UJA5 497 aaKnown RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 BTBD3Q9Y2F9 522 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 PLEKHM1Q9Y4G2 1056 aa9.89□□□□□ -0.83
USP3-216ENST00000559873 PCYT1BQ9Y5K3 369 aaPredicted RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 CNOT1A5YKK6 2376 aaKnown RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 COL5A1P20908 1838 aaPredicted RBP9.89□□□□□ -0.83
USP3-216ENST00000559873 TDRD6O60522 2096 aaKnown RBP9.88□□□□□ -0.83
USP3-216ENST00000559873 A6NCN8 305 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 TRIM38O00635 465 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 TNFSF14O43557 240 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 SGTAO43765 313 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 KDM1AO60341 852 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 RPN2P04844 631 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 CDK4P11802 303 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 CKMT1AP12532 417 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 CKMT2P17540 419 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 NDUFS1P28331 727 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 ATP5DP30049 168 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 MAPK9P45984 424 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 SLC12A2P55011 1212 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 GPX6P59796 221 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 VSNL1P62760 191 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 NFE2L1Q14494 772 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 RSPO4Q2I0M5 234 aaPredicted RBP9.88□□□□□ -0.83
USP3-216ENST00000559873 PROX2Q3B8N5 592 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 KBTBD12Q3ZCT8 623 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 CTSL3PQ5NE16 218 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 PLEKHS1Q5SXH7 462 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 METRNLQ641Q3 311 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 OGFOD3Q6PK18 319 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 ABRAXAS1Q6UWZ7 409 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 CCNI2Q6ZMN8 369 aaPredicted RBP9.88□□□□□ -0.83
USP3-216ENST00000559873 PIP4P1Q86T03 277 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 RBM12BQ8IXT5 1001 aaKnown RBP9.88□□□□□ -0.83
USP3-216ENST00000559873 GSPT2Q8IYD1 628 aaKnown RBP9.88□□□□□ -0.83
USP3-216ENST00000559873 CFAP206Q8IYR0 622 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 ZBTB2Q8N680 514 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 PPM1NQ8N819 430 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 GPATCH11Q8N954 259 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 KYQ8NBH2 561 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 DEFB124Q8NES8 71 aa9.88□□□□□ -0.83
USP3-216ENST00000559873 BAHD1Q8TBE0 780 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms