RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EDEM2Q9BV94 578 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 ROPN1BQ9BZX4 212 aaPredicted RBP9.08□□□□□ -0.96
LDLR-210ENST00000559340 TMEM168Q9H0V1 697 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 P2RY12Q9H244 342 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 ROPN1Q9HAT0 212 aaPredicted RBP9.08□□□□□ -0.96
LDLR-210ENST00000559340 SYTL2Q9HCH5 934 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 LATS2Q9NRM7 1088 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 TM7SF3Q9NS93 570 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 KLC4Q9NSK0 619 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 DNAAF2Q9NVR5 837 aaKnown RBP9.08□□□□□ -0.96
LDLR-210ENST00000559340 NCKIPSDQ9NZQ3 722 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 SLC24A2Q9UI40 661 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 ZNF180Q9UJW8 692 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 CACNA1AO00555 2505 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 MYO15AQ9UKN7 3530 aa9.08□□□□□ -0.96
LDLR-210ENST00000559340 IQANK1A0A1B0GTG1 560 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 FAM95CA0A1B0GW59 222 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 MED19A0JLT2 244 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 EIF3FO00303 357 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 IFRD1O00458 451 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 SCAMP1O15126 338 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 ZW10O43264 779 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 CBSLP0DN79 551 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 DGKAP23743 735 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 EPHA8P29322 1005 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 PBLDP30039 288 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 CA5AP35218 305 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 CBSP35520 551 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 HSD17B3P37058 310 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 ACTR1BP42025 376 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 MAPK9P45984 424 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 RPIAP49247 311 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 RGS4P49798 205 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 DUSP3P51452 185 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 ACTR1AP61163 376 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 DNAJC3Q13217 504 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 PDAP1Q13442 181 aaKnown RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 BIRC2Q13490 618 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 NAA30Q147X3 362 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 SF3A2Q15428 464 aaKnown RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 SMAD1Q15797 465 aaKnown RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 UAP1Q16222 522 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 PRAMEF14Q5SWL7 426 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 METRNLQ641Q3 311 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 WASH2PQ6VEQ5 465 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 KDM7AQ6ZMT4 941 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 ZC3HC1Q86WB0 502 aaKnown RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 ZNF547Q8IVP9 402 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 RIBC1Q8N443 379 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 GPATCH11Q8N954 259 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 ZNF548Q8NEK5 533 aaPredicted RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 FAM46DQ8NEK8 389 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 SLC44A1Q8WWI5 657 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 KCNJ9Q92806 393 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 MTBPQ96DY7 904 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 ELMO2Q96JJ3 720 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 FOPNLQ96NB1 174 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 BIRC8Q96P09 236 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 DPEP2Q9H4A9 486 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 OSGEPL1Q9H4B0 414 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 SMOC1Q9H4F8 434 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 STN1Q9H668 368 aaKnown RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 WASH6PQ9NQA3 447 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 SMYD2Q9NRG4 433 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 TRMT6Q9UJA5 497 aaKnown RBP9.07□□□□□ -0.96
LDLR-210ENST00000559340 DHRS7Q9Y394 339 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 HEBP2Q9Y5Z4 205 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 PRSS21Q9Y6M0 314 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 RP1P56715 2156 aa9.07□□□□□ -0.96
LDLR-210ENST00000559340 KIR2DS5A0A0G2JLQ3 304 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 A0A0G2JNG1 304 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 LNP1A1A4G5 178 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 PDZK1P1A8MUH7 402 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 CXorf49A8MYA2 514 aaPredicted RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 KIR2DS3K7RE56 304 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 YY2O15391 372 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 FLRT2O43155 660 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SGTAO43765 313 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 KDM1AO60341 852 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 TCEA3O75764 348 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 FUCA1P04066 466 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 RPN2P04844 631 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ITGA2BP08514 1039 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SNRPAP09012 282 aaKnown RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 NUDT17P0C025 328 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 SLC35G4P0C7Q5 338 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ENO3P13929 434 aaPredicted RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 ITGB6P18564 788 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 AOAHP28039 575 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 GABRB3P28472 473 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 CRABP2P29373 138 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ATP5DP30049 168 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 LIMK2P53671 638 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 BNIP3Q12983 259 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 C1orf61Q13536 156 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 USP10Q14694 798 aaKnown RBP9.06□□□□□ -0.96
LDLR-210ENST00000559340 KIR2DS5Q14953 304 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 RASA2Q15283 850 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 PLA2G4EQ3MJ16 856 aa9.06□□□□□ -0.96
LDLR-210ENST00000559340 ZNF789Q5FWF6 425 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms